PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002763G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Nin-like | ||||||||
Protein Properties | Length: 316aa MW: 33987.2 Da PI: 9.4753 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 67.4 | 2.2e-21 | 28 | 72 | 4 | 48 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++s e++sk Fslpi++AA+ Lgvc++vLKr CR +GI RWP+Rk PH01002763G0330 28 SLSYEEISKLFSLPIAEAASILGVCTSVLKRLCRTHGIVRWPYRK 72 6899****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.085 | 12 | 97 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-19 | 29 | 72 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MASNAQAQPP VQQQAAAAAP QPKSTRVSLS YEEISKLFSL PIAEAASILG VCTSVLKRLC 60 RTHGIVRWPY RKGSTAHLLS EGLDVGSSRL GSGVVTRPSG AFQGVAKSQQ GSSKAGQVSP 120 PGKQNAPSGL PISAQASQTK GIPTYMDDFK YGFPPSGLSS ENMKWWGTSS HRDSTPAKDE 180 RREAPKSTHD ASKGVTDDDE LDWGADEAES EADSVVTTEP SAQLCSLRRK AVDDGRKLLN 240 GDARRGQEFC RLHKRQKMVL AQLARAIVGI TRPKPFSPLF GQNAVLLWHR GQERLPLADC 300 SFTRVRDVPE ILEGD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002763G0330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643988.1 | 1e-113 | PREDICTED: protein NLP2-like | ||||
TrEMBL | A0A0E0JGB6 | 1e-112 | A0A0E0JGB6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G09100.1 | 1e-113 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6705 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 3e-09 | Nin-like family protein |