PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002733G0270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21113.8 Da PI: 6.5451 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4e-19 | 51 | 101 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg+f tae Aa a+++a+++++g+ PH01002733G0270 51 QYRGIRRRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDRAARRIRGA 101 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-22 | 51 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.316 | 51 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-32 | 51 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-20 | 51 | 110 | No hit | No description |
PRINTS | PR00367 | 5.2E-11 | 52 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-12 | 52 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MCGGAIIQDY IPARRRVSAA DFWPDADDSD PHPHGPATEK APRAKRERKN QYRGIRRRPW 60 GKWAAEIRDP VKGVRVWLGT FPTAEAAALA YDRAARRIRG AKAKVNFPND VPRAASAVLP 120 PPKKEPESAA CSDEVKELSE ELMAYESYMN FLGIPYMEGG DAVAPTTAAE EAPAPAGLWS 180 FEDYYQPSLE L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 51 | 111 | 5 | 66 | ATERF1 |
3gcc_A | 4e-23 | 51 | 111 | 5 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 58 | KRERKNQYRGIRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002733G0270 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095726 | 0.0 | FP095726.1 Phyllostachys edulis cDNA clone: bphylf030c12, full insert sequence. | |||
GenBank | FP096664 | 0.0 | FP096664.1 Phyllostachys edulis cDNA clone: bphyem124m12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131773.1 | 9e-76 | uncharacterized protein LOC100193143 | ||||
TrEMBL | B4FDY9 | 2e-74 | B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | K4JRM4 | 2e-74 | K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G169382_P01 | 4e-75 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-34 | ERF family protein |