PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002704G0220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35029.4 Da PI: 6.8536 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 10 | 46 | 7 | 44 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +Ed++l++ v+++G ++W tIar ++ gR++ qc rw PH01002704G0220 10 QEDKKLIQMVNKHGQKHWPTIARAIP-GRSATQCLVRW 46 69************************.*******9999 PP | |||||||
2 | Myb_DNA-binding | 40.3 | 7.1e-13 | 56 | 98 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE+++l++a++ +G++ W ++++ gRt +k++w+ PH01002704G0220 56 KEAWSQEEELRLIRAHQIYGNK-WCEMVKHFP-GRTNHAIKEHWR 98 579*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.049 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-5 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 10 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.68E-23 | 10 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-10 | 10 | 47 | No hit | No description |
Pfam | PF13921 | 1.1E-12 | 10 | 67 | No hit | No description |
PROSITE profile | PS51294 | 20.219 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-11 | 55 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-11 | 58 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 59 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSVDKTKLIQ EDKKLIQMVN KHGQKHWPTI ARAIPGRSAT QCLVRWKFSL DPGINKEAWS 60 QEEELRLIRA HQIYGNKWCE MVKHFPGRTN HAIKEHWRGP MKRKLDSYLA SGLLEQFPGL 120 PETPSVPQNS DSDNLKDIEG SSHTNRQSSK SKLGLTELGE NADTSEGESS DFMYAGELDA 180 PSAKASERMM ARSKQRVRTR RRLDFLSSPV ELKVSTAAVN SQRPLQKRKQ MRPAFDNISP 240 SNVLQDISPE VPSECTDKAL SPADTYQPSD VHSSETADPC SLEVHQADVS DLLDMPYCDG 300 LMIVPPGSPH DGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-26 | 10 | 107 | 13 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002704G0220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756287.1 | 1e-136 | transcription factor MYB3R-2 isoform X2 | ||||
TrEMBL | A0A0Q3F451 | 1e-135 | A0A0Q3F451_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G10067.1 | 1e-133 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 3e-43 | myb domain protein 3r-4 |