PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002701G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRF | ||||||||
Protein Properties | Length: 261aa MW: 27787.7 Da PI: 4.6294 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.8 | 3.8e-23 | 171 | 215 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+C+rH+hrgr+r + ++e PH01002701G0020 171 EPEPGRCRRTDGKKWRCWRNAIPNEKYCQRHMHRGRKRPVQLVVE 215 69************************************9998875 PP | |||||||
2 | QLQ | 54.3 | 4e-19 | 105 | 140 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k PH01002701G0020 105 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 140 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 104 | 140 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 105 | 140 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.0E-12 | 105 | 139 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.294 | 171 | 215 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.1E-19 | 172 | 210 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAAEGEAKKD TNPPGGGGDN PKEAAEEATQ EAGGQEAGQE QEEEEGEKAD REGKDGDAGK 60 EEEKEENACK DLVLVEDPEE AAASAALQEE MKALVASVPV GAGAAFTAMQ LQELEQQSRV 120 YQYMAARVPV PTHLVFPIWK SVTGASSEGA QKYPTLMGLA TLCLDFGKNP EPEPGRCRRT 180 DGKKWRCWRN AIPNEKYCQR HMHRGRKRPV QLVVEDDEPD SASGSKSASG KATEGGKKTD 240 DKSSSSKKLA VAAPAAVEST * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002701G0020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099168 | 0.0 | FP099168.1 Phyllostachys edulis cDNA clone: bphylf034g02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657676.1 | 1e-137 | PREDICTED: growth-regulating factor 11 | ||||
Refseq | XP_020153628.1 | 1e-137 | growth-regulating factor 11-like | ||||
Swissprot | A5HEG9 | 1e-138 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | A0A1D5UD70 | 1e-139 | A0A1D5UD70_WHEAT; Growth regulating factor 8-B1 | ||||
TrEMBL | A0A446M7A7 | 1e-139 | A0A446M7A7_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BS_E3CBE0B73.1 | 1e-140 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 8e-30 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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