PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002685G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 606aa    MW: 65889.2 Da    PI: 6.7557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002685G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23105206199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +   +  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + 
  PH01002685G0120 105 FAKTLTQSDANNGGGFSVPRFCAETIfpvldysAEPPVQ--NVLAKDVHGVEWKFRHIYRGTPRRHLLTTGWSNFVNQKKLLTGDSIVFL--RG 194
                      89*********************999****987555556..69999********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++  +v+++r+
  PH01002685G0120 195 EGGDVHVGIRRA 206
                      89999****996 PP
2Auxin_resp75.71.2e-252032612683
       Auxin_resp  26 vkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      ++++k  +a++v++++GmRfkmafetedss++++ +Gtv+gv+++dp++Wp+S+Wr+L+
  PH01002685G0120 203 IRRAKRGAAMQVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQAADPIQWPQSPWRLLQ 261
                      67788899*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-3596209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29102207IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-20104205No hitNo description
PROSITE profilePS5086312.52105207IPR003340B3 DNA binding domain
PfamPF023622.3E-21105206IPR003340B3 DNA binding domain
SMARTSM010196.2E-20105207IPR003340B3 DNA binding domain
PfamPF065072.5E-20205261IPR010525Auxin response factor
PROSITE profilePS5174517.743519599IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDSQLWLACA GSMCSVPPVG AAVYYFPQGH AEQASATVDL SAARVPALVP CRVAAVRFMA  60
DAQSDEVFAR IRLVPLRPGD AVVDVGEAAD EGRQQQEDRA KPASFAKTLT QSDANNGGGF  120
SVPRFCAETI FPVLDYSAEP PVQNVLAKDV HGVEWKFRHI YRGTPRRHLL TTGWSNFVNQ  180
KKLLTGDSIV FLRGEGGDVH VGIRRAKRGA AMQVQWCPGM RFKMAFETED SSRISWFMGT  240
VAGVQAADPI QWPQSPWRLL QVTWDEPELL QDVKRVCPWL VELVSSMPNL NVPSFSPPRK  300
KPRIPPYTDF PFANQFFHPA PFPPSPLAVA HSHHHDQLHH NFPFFLFPDS SSAPPAGIQG  360
ARHAQFGPSF SDLHVRNLQS SLVYSGIRRP AADHVAPRPP RIRTNLTIGS PPAREDDASC  420
SLPIGAKKPD DVKPPALLLF GQAILTEEQM KGSNSGGLTS PGAAGNGSPN WESEKVPNVS  480
EGSGSGVIQG SPTNNTSSWR LQWFGDGSSQ TSSEFGLEPG QCKVFIESDA VGRNLDLSAL  540
SSFEELYTRL SDMFCIESGE LRSHVLYRSA AGEIKHVGDE TFSAFVKSAR RLTILTDAGS  600
DNLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-71128251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002685G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942530.0FP094253.1 Phyllostachys edulis cDNA clone: bphyem102g04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2231e-177ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A3B6C9Y20.0A0A3B6C9Y2_WHEAT; Auxin response factor
STRINGMLOC_77438.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.14e-92auxin response factor 16