PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002681G0110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 229aa MW: 24040.8 Da PI: 8.2055 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 65.8 | 4.7e-21 | 124 | 158 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++ PH01002681G0110 124 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 158 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.167 | 118 | 154 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-19 | 118 | 169 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.85E-14 | 121 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.4E-18 | 122 | 158 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.34E-15 | 123 | 155 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 124 | 149 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-18 | 124 | 158 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MLHHYSGNDA CPAMASTFSL FFPQVEEACD DCNTITTSPS SRSPSSSSTG SVDCTLSLGT 60 PSSRRAAPEP KRRTPASYPS LSATVSWDPA AESYYCQQGK PTTAGASKGA VGSVGHYPLL 120 DRRCANCGTT STPLWRNGPR GPKSLCNACG IRFKKEERRA AAAAESGGAW CGYSAQHAHG 180 SAPKAPRAVS YAEEALPCGD VDAEAPFLAW RLNVVPPAPA RPTAFSVWP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002681G0110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095696 | 0.0 | FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654834.1 | 7e-66 | PREDICTED: GATA transcription factor 19 | ||||
Swissprot | B8AX51 | 2e-53 | GAT15_ORYSI; GATA transcription factor 15 | ||||
TrEMBL | A0A0E0L658 | 1e-64 | A0A0E0L658_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G24550.1 | 2e-65 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 3e-20 | GATA transcription factor 19 |