PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002680G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 274aa    MW: 30149.2 Da    PI: 6.1741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002680G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
  PH01002680G0080 14 KGPWTAEEDQKLVGFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.61.1e-1670111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + eE++l +d+++qlG++ W++ a++++ gRt++++k++w+++
  PH01002680G0080  70 LSDEEEKLVIDLHAQLGNR-WSKMAARLP-GRTDNEIKNHWNTH 111
                      589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.074961IPR017930Myb domain
SuperFamilySSF466891.98E-2611108IPR009057Homeodomain-like
SMARTSM007173.0E-111363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
CDDcd001674.82E-91661No hitNo description
PROSITE profilePS5129425.56362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2463116IPR009057Homeodomain-like
SMARTSM007171.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.9E-1470111IPR001005SANT/Myb domain
CDDcd001675.00E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVGFLL THGHCCWRVV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEEKLVID LHAQLGNRWS KMAARLPGRT DNEIKNHWNT HIRKKLRKMG  120
IDPVTHRPLE EAPSTAQELE QQRPPQQEPA QLKEPPPQQH HGELLRQEEE EAVPMIQPHE  180
ITAPLPQPTA AATSNCSASP ASVVSPSCCS SASAASAVSG VDVGEWPEPI YLFGMDGIMD  240
VGWDGFISGA GGMGVDPLDH YYPGGGFDQD DWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002680G0080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0089811e-171BT008981.2 Triticum aestivum clone wdk2c.pk006.d4:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147496.11e-118protein ODORANT1-like
SwissprotQ9C7U79e-84MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1D6CI261e-119A0A1D6CI26_WHEAT; MYB transcription factor 83
TrEMBLA0A446Y8W21e-119A0A446Y8W2_TRITD; Uncharacterized protein
STRINGEMT124441e-117(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-83myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]