PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002656G0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 993aa    MW: 110381 Da    PI: 5.6502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002656G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.6e-191702991128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd...iykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                      lp+G +F+P+d++l+  +L+++v +        +  +e+ik+vd   ++ + +P+d+p  v+++ +  yfF+++ k y++++   + +    W+
  PH01002656G0020 170 LPRGAQFNPSDSDLL-WHLAAEVGNGLasrhpfI--NEFIKSVDenrVFGCtHPQDIP-GVRQDGRASYFFHNKFKFYNNEND--KYI---SWE 254
                      699************.778888876654564332..3456666633344434******.677888999**********87443..333...4** PP

              NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      ++g+ ++++  +g+l g+k+++v+y  k +++++++tdW +h+y++
  PH01002656G0020 255 KSGTPRSIIL-DGSLRGCKEVFVLYsyKTNDNSPQRTDWRLHQYHI 299
                      **********.999**********97677889999*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-25163317IPR003441NAC domain
PROSITE profilePS5100522.873170317IPR003441NAC domain
PfamPF023653.6E-7171299IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    Send to blast
MSPCHLATAR RCLVLPAATS RYLVKVHHSN AGVRGFAGSI LDVWGGLDTL DDPETLSVLA  60
SGLRKPTPQG KAKKPRSNLP SSPRYCLSQP QPARLSNLNA LMATVVGPPP SRLGPDPDPD  120
HLPLAERRRR LLRSPPAPRV EPSPPAPDRC EASVAAEGAV GAAQQSWPGL PRGAQFNPSD  180
SDLLWHLAAE VGNGLASRHP FINEFIKSVD ENRVFGCTHP QDIPGVRQDG RASYFFHNKF  240
KFYNNENDKY ISWEKSGTPR SIILDGSLRG CKEVFVLYSY KTNDNSPQRT DWRLHQYHIK  300
NTMKGEEELV VSKIFYNSQK NRCEWDGKAP ARSAQDASAT DNDSKEVIQL EIRSANVATE  360
SNFAEDCDSE LLSGNVNNQE QVKMETYPDQ NKLSSCKDVL DTTHINHENQ INDHAETELD  420
NVSLEERYII LLAGKHSCSA RVSVEKQMGA ETSGSSPKSE TEEMYGSILE IMKEQPTGKI  480
YEISSAPSTV DSTGDDSNMM LLGKVPPGTQ ISPLECFVDS NDYRAELLSS PTPTCGNENI  540
QLAVRNRETF LVDVKLEPAL EGYEIYPSES PRVKSHHSSK HGSLENTGSV PGCLSKDSET  600
DFELLHGMGD LAEKISADCA CSNQSIDPKH VKGCSVVGSK NSVSSDICKI ISAAASSQAN  660
STHAEGPLPS LGVKSELTGS ELPGLYYAYR NDVCRNSSEK AFEEDSYRID EGIAYCSRRR  720
RKKTATNVVC RDSIEKALEE DAPGLLQILL DKGIRVKEIK LYGVEEDDEM LPDCMESDFQ  780
DLENVITKLF PHRSSLLKSA ARHAKGEKAM YCLACLISLI EQSRYLQFRD CPVEWGWCRD  840
LQSFVFVFRS HNRIVLERPE YGYATYFFEI VQSVPIEWQI RRLVTAMKLS SCGRTALIEN  900
RPLLVGEDLT EGEAHVLEEY GWIPNTGLGT MLNYRDRVVH DRWNEKYSTD WRMKIGKLLM  960
AGYSEGQLIT THIPTKVGKL SEDTEVKLED PF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002656G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153314.10.0uncharacterized protein LOC109738630 isoform X1
TrEMBLA0A287PG210.0A0A287PG21_HORVV; Uncharacterized protein
STRINGORUFI03G08860.10.0(Oryza rufipogon)
STRINGONIVA06G00900.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-31NAC family protein