PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01002656G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 993aa MW: 110381 Da PI: 5.6502 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.2 | 1.6e-19 | 170 | 299 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd...iykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+G +F+P+d++l+ +L+++v + + +e+ik+vd ++ + +P+d+p v+++ + yfF+++ k y++++ + + W+ PH01002656G0020 170 LPRGAQFNPSDSDLL-WHLAAEVGNGLasrhpfI--NEFIKSVDenrVFGCtHPQDIP-GVRQDGRASYFFHNKFKFYNNEND--KYI---SWE 254 699************.778888876654564332..3456666633344434******.677888999**********87443..333...4** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++g+ ++++ +g+l g+k+++v+y k +++++++tdW +h+y++ PH01002656G0020 255 KSGTPRSIIL-DGSLRGCKEVFVLYsyKTNDNSPQRTDWRLHQYHI 299 **********.999**********97677889999*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-25 | 163 | 317 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.873 | 170 | 317 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-7 | 171 | 299 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 993 aa Download sequence Send to blast |
MSPCHLATAR RCLVLPAATS RYLVKVHHSN AGVRGFAGSI LDVWGGLDTL DDPETLSVLA 60 SGLRKPTPQG KAKKPRSNLP SSPRYCLSQP QPARLSNLNA LMATVVGPPP SRLGPDPDPD 120 HLPLAERRRR LLRSPPAPRV EPSPPAPDRC EASVAAEGAV GAAQQSWPGL PRGAQFNPSD 180 SDLLWHLAAE VGNGLASRHP FINEFIKSVD ENRVFGCTHP QDIPGVRQDG RASYFFHNKF 240 KFYNNENDKY ISWEKSGTPR SIILDGSLRG CKEVFVLYSY KTNDNSPQRT DWRLHQYHIK 300 NTMKGEEELV VSKIFYNSQK NRCEWDGKAP ARSAQDASAT DNDSKEVIQL EIRSANVATE 360 SNFAEDCDSE LLSGNVNNQE QVKMETYPDQ NKLSSCKDVL DTTHINHENQ INDHAETELD 420 NVSLEERYII LLAGKHSCSA RVSVEKQMGA ETSGSSPKSE TEEMYGSILE IMKEQPTGKI 480 YEISSAPSTV DSTGDDSNMM LLGKVPPGTQ ISPLECFVDS NDYRAELLSS PTPTCGNENI 540 QLAVRNRETF LVDVKLEPAL EGYEIYPSES PRVKSHHSSK HGSLENTGSV PGCLSKDSET 600 DFELLHGMGD LAEKISADCA CSNQSIDPKH VKGCSVVGSK NSVSSDICKI ISAAASSQAN 660 STHAEGPLPS LGVKSELTGS ELPGLYYAYR NDVCRNSSEK AFEEDSYRID EGIAYCSRRR 720 RKKTATNVVC RDSIEKALEE DAPGLLQILL DKGIRVKEIK LYGVEEDDEM LPDCMESDFQ 780 DLENVITKLF PHRSSLLKSA ARHAKGEKAM YCLACLISLI EQSRYLQFRD CPVEWGWCRD 840 LQSFVFVFRS HNRIVLERPE YGYATYFFEI VQSVPIEWQI RRLVTAMKLS SCGRTALIEN 900 RPLLVGEDLT EGEAHVLEEY GWIPNTGLGT MLNYRDRVVH DRWNEKYSTD WRMKIGKLLM 960 AGYSEGQLIT THIPTKVGKL SEDTEVKLED PF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01002656G0020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153314.1 | 0.0 | uncharacterized protein LOC109738630 isoform X1 | ||||
TrEMBL | A0A287PG21 | 0.0 | A0A287PG21_HORVV; Uncharacterized protein | ||||
STRING | ORUFI03G08860.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA06G00900.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7479 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 4e-31 | NAC family protein |