PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002652G0230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | AP2 | ||||||||
Protein Properties | Length: 226aa MW: 25209 Da PI: 10.0238 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.5 | 3.3e-13 | 54 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d s+n ++k+ g ++ +e Aa+a++ a++k++g PH01002652G0230 54 SVHRGVTRHRWTGRYEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 110 689******************8888888775555599******************98 PP | |||||||
2 | AP2 | 30.3 | 1.1e-09 | 153 | 187 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 s+y+GV +++ +grW+A+I + g +k+ +lg+++ PH01002652G0230 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYDD 187 89****99**********99966...3.6********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-15 | 54 | 120 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.3E-9 | 55 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-19 | 55 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.637 | 55 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-12 | 55 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-5 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-5 | 100 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-5 | 153 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-6 | 153 | 187 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 8.992 | 154 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.037 | 154 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-5 | 154 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAKTRKNSTA ASNSNSGTGH GDAAVALAAA GAVRAKPKRT RKSVPRESPS QRSSVHRGVT 60 RHRWTGRYEA HLWDKNSWNE SQNKKGKQGA YDDEEAAARA YDLAALKYWG PDTILNFPLS 120 AYEEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL 180 YLGTYDDSLL WAWMSSGLWM CDSGSAECEV LDLILTYAAT QGRWG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002652G0230 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111617 | 1e-168 | AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 1e-104 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 5e-83 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | J3MXL3 | 1e-103 | J3MXL3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G17420.1 | 1e-104 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 2e-78 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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