PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002648G0300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19193.7 Da PI: 11.5892 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++aa+++++g PH01002648G0300 24 RYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 73 7********.**********93....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-14 | 24 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.923 | 24 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-33 | 24 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-37 | 24 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-23 | 24 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.0E-12 | 25 | 36 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.88E-14 | 32 | 82 | No hit | No description |
PRINTS | PR00367 | 8.0E-12 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MMPSTWTQET EQGLVTAVAS PRRRYRGVRR RPWGKWAAEI RDPQKAARVW LGTFATAEDA 60 ARAYDAAALR FRGSRAKLNF PEEASSLAAA RLRRQPGEDH MGRLPCPERA HRRGANGTTD 120 RFVGNVNGRF LRSWTIGPSP PPPMCSVALA AARPAPPLFC GSGTHGSNGT EKGGED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-24 | 23 | 86 | 4 | 68 | ATERF1 |
3gcc_A | 6e-24 | 23 | 86 | 4 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002648G0300 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 6e-71 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821609.1 | 6e-53 | ethylene-responsive transcription factor ERF095-like | ||||
TrEMBL | A0A2T7F7G8 | 9e-51 | A0A2T7F7G8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J16062.1.p | 4e-42 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15038 | 11 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 4e-18 | ERF family protein |