PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002645G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 258aa    MW: 27015.9 Da    PI: 9.0923
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002645G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.91.9e-1981135256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+ +++++ +++  LA++l+L  rqV vWFqNrRa+ k
  PH01002645G0080  81 RKKLRLSKDQAAVLEECFKTHHTLTPKQKLALANSLNLRPRQVEVWFQNRRARTK 135
                      788899***********************************************98 PP
2HD-ZIP_I/II124.35.6e-4081171192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk
  PH01002645G0080  81 RKKLRLSKDQAAVLEECFKTHHTLTPKQKLALANSLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLAEENRRLQKEVAELR-ALK 171
                      69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-1955138IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1871138IPR009057Homeodomain-like
PROSITE profilePS5007116.64977137IPR001356Homeobox domain
SMARTSM003892.3E-1679141IPR001356Homeobox domain
PfamPF000461.0E-1681135IPR001356Homeobox domain
CDDcd000861.95E-1681138No hitNo description
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PfamPF021832.0E-11137171IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-22137180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLASQPQP SFCLIPGIVA AADQEVSPAA AEERTCSPAS PVSCGSGSGK  60
RAERSANSGD EDDAGCDGNA RKKLRLSKDQ AAVLEECFKT HHTLTPKQKL ALANSLNLRP  120
RQVEVWFQNR RARTKLKQTE VDCEYLKRWC EQLAEENRRL QKEVAELRAL KAAAPAGAAG  180
PLTTLTMCLS CKRVASSSAC TAKAANLSAA HVAAAANAGV PSPVVLPGHR QLFCGLRETG  240
AMYGGPSGLA KAVKAAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002645G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.14e-90homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9311e-72HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-72HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A3B6I0H24e-99A0A3B6I0H2_WHEAT; Uncharacterized protein
TrEMBLA0A446RHU24e-99A0A446RHU2_TRITD; Uncharacterized protein
STRINGTraes_4AL_822582A19.11e-100(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-54homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]