PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002631G0130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 26755.3 Da PI: 8.8088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.4 | 4.2e-47 | 16 | 135 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 rFhPtdeelv++yL+++++g ++ + +i+evd+y+++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg d++v + + PH01002631G0130 16 RFHPTDEELVMHYLCRRCAGLPIAV-GIIAEVDLYRYDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADQPVGT--PKP 106 9**********************99.99***************7666789*************************************98..778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +kk Lvfy g+apkg kt+W+mheyrl PH01002631G0130 107 LAIKKALVFYAGKAPKGDKTNWIMHEYRL 135 9**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.17 | 11 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-23 | 16 | 135 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-51 | 16 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSGGGGSASQ GQDLHRFHPT DEELVMHYLC RRCAGLPIAV GIIAEVDLYR YDPWQLPRMA 60 LYGEKEWYFF SPRDRKYPNG SRPNRAAGTG YWKATGADQP VGTPKPLAIK KALVFYAGKA 120 PKGDKTNWIM HEYRLADVDR SARKKNSLRL AAYYDVRPSD SMPRAHADSS CSEHVLTASC 180 GRERPEVQSQ PKIAEWERTF ATADPGVKPA GSLLGQIDPA AGLAADDPLL QDILMYWGKP 240 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swm_B | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swm_C | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swm_D | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swp_A | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swp_B | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swp_C | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
3swp_D | 2e-61 | 15 | 140 | 24 | 150 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002631G0130 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365812 | 0.0 | AK365812.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037P06. | |||
GenBank | AK376931 | 0.0 | AK376931.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166636.1 | 1e-116 | NAC domain-containing protein 48-like | ||||
Swissprot | Q7F2L3 | 4e-92 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | A0A446K217 | 1e-116 | A0A446K217_TRITD; Uncharacterized protein | ||||
STRING | Si002413m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-88 | NAC family protein |