PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002611G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 401aa MW: 45184 Da PI: 9.2117

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002611G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.5	1.1e-35	24	166	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 lp+G++F+Ptd+el+ e+L++kv+++ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ PH01002611G0200 24 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTTDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhK 115 799**********.99**9996775553333333666646******.566777899**************7566666443 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l PH01002611G0200 116 GETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 166 3778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-39	15	185	IPR003441	NAC domain
PROSITE profile	PS51005	34.072	24	185	IPR003441	NAC domain
Pfam	PF02365	2.9E-16	25	166	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MRILGATPFD GINWCNCKKD WVGLPAGVKF DPTDQELIEH LEAKVREEGS RSHPLIDEFI 60 PTIEGEDGIC YTHPEKLPGV TTDGLSKHFF HRPSKAYTTG TRKRRKIQTE CDVHKGETRW 120 HKTGKTRPVM VNGRQKGCKK ILVLYTNFGK HRKPEKTNWV MHQYHLGDLE EEKEGELVVC 180 KIFYQTQPRQ CSWSSDRGAA AMAATVQEQR RRDNGSGSCS SRDHEVSATS YPAAYAVAAA 240 VEMQHLKHVS ADHFSFTPFR KSFEEDGIGG DQVSSDQLGR SDQQHSGQEQ QPHRPVLATT 300 AVPTTAFLIS RPTNPVSTIV PPAMQHASVV LDHDQFHVPA ILLHHDKFQN MQQQHQQQHA 360 QKLDRRKLQF LTPKRQIGRL THTGLLTTKI IMDSSNKAGK *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MRILGATPFD GINWCNCKKD WVGLPAGVKF DPTDQELIEH LEAKVREEGS RSHPLIDEFI  60
PTIEGEDGIC YTHPEKLPGV TTDGLSKHFF HRPSKAYTTG TRKRRKIQTE CDVHKGETRW  120
HKTGKTRPVM VNGRQKGCKK ILVLYTNFGK HRKPEKTNWV MHQYHLGDLE EEKEGELVVC  180
KIFYQTQPRQ CSWSSDRGAA AMAATVQEQR RRDNGSGSCS SRDHEVSATS YPAAYAVAAA  240
VEMQHLKHVS ADHFSFTPFR KSFEEDGIGG DQVSSDQLGR SDQQHSGQEQ QPHRPVLATT  300
AVPTTAFLIS RPTNPVSTIV PPAMQHASVV LDHDQFHVPA ILLHHDKFQN MQQQHQQQHA  360
QKLDRRKLQF LTPKRQIGRL THTGLLTTKI IMDSSNKAGK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-12	22	166	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002611G0200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017005	0.0	KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818121.1	0.0	NAC domain-containing protein 75-like isoform X1
Refseq	XP_025818123.1	0.0	NAC domain-containing protein 75-like isoform X1
Swissprot	Q9M0F8	1e-122	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0D9Y4F2	0.0	A0A0D9Y4F2_9ORYZ; Uncharacterized protein
STRING	OGLUM01G06390.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-110	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]