PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01002611G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 24362.4 Da PI: 6.1053 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.2e-10 | 6 | 46 | 9 | 48 |
HHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 d+ l +++++G+g +W + +++ g++R++k+c++rw++yl PH01002611G0010 6 DDALRAYIQRHGTGgSWISLPKKAGLRRCGKSCRLRWLNYL 46 678999*********************************97 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 53 | 95 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd +++ + lG++ W++Ia+++ +Rt++++k++w++ PH01002611G0010 53 GGFTDEEDAIIISLYSTLGSK-WSLIASHLE-RRTDNDVKNYWNT 95 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.445 | 1 | 46 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.5 | 2 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.32E-4 | 2 | 46 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 5 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-8 | 6 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.14E-21 | 32 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.897 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-12 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-12 | 53 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 54 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-10 | 55 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
TSVSSDDALR AYIQRHGTGG SWISLPKKAG LRRCGKSCRL RWLNYLRPDI RHGGFTDEED 60 AIIISLYSTL GSKWSLIASH LERRTDNDVK NYWNTKLKKR LAAEASSIPS LPFLPLPAPA 120 PAPVLAPVPT HPSLLPLAIP TVKTETYTCD DFLVSAELQD PFAGCADADG STSASAASSA 180 SNRSADNGTA DGGGIFPDFC MGSDLGGAAA VDQFLGGYYY PLDPSLSLV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 4 | 101 | 13 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01002611G0010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK376409 | 1e-100 | AK376409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123B18. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455023.1 | 4e-85 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6SQD0 | 6e-86 | A0A3L6SQD0_PANMI; Transcription factor RAX2-like | ||||
STRING | Sb03g003120.1 | 2e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36890.1 | 3e-51 | MYB family protein |