PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002597G0220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 322aa    MW: 35579.4 Da    PI: 10.0921
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002597G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind395.76.4e-1211832115301
        GAGA_bind  15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgt 105
                       p+++lk++ +++l+++++erd++irer++al+ekkaavaerdmaf+qrd+a+aern+a+verdn+l+al+l++++     +++++++++lsgt
  PH01002597G0220  18 MPQRHLKDQHSMNLLALMNERDSAIRERDHALAEKKAAVAERDMAFAQRDAAMAERNAAVVERDNALAALELARTNRLnvnNVNGFSQGSLSGT 111
                      37799*****************************************************************9999887667789999******** PP

        GAGA_bind 106 ksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesader..... 186
                      k+i++++qls+      ql+ds+++ +r ++++ea+pi++a+ ++ ++k++kk++ +++p+++ +   +k+kk + ++k+v +++  e+     
  PH01002597G0220 112 KNIHHHDQLSHvqsspLQLADSPYDhVRAMHISEAYPISTAPGNIGKAKRPKKNNGQASPLKRPSGvlRKTKKATGDWKNVGMSGGGEDsarvs 205
                      ********999999999********99************************************999887778899999***9998764457888 PP

        GAGA_bind 187 .skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
                       + +e+k++dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dl
  PH01002597G0220 206 vMENEWKDQDLGLNQVTFDESTMPAPVCSCTGKLRQCYKWGNGGWQSSCCTMSISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDL 299
                      899******************************************************************************************* PP

        GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
                      s+pvDLkd+WAkHGtn+++tir
  PH01002597G0220 300 STPVDLKDYWAKHGTNRYITIR 321
                      *********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1551321IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-9615321IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGNAQAEFGK FYLFQWMMPQ RHLKDQHSMN LLALMNERDS AIRERDHALA EKKAAVAERD  60
MAFAQRDAAM AERNAAVVER DNALAALELA RTNRLNVNNV NGFSQGSLSG TKNIHHHDQL  120
SHVQSSPLQL ADSPYDHVRA MHISEAYPIS TAPGNIGKAK RPKKNNGQAS PLKRPSGVLR  180
KTKKATGDWK NVGMSGGGED SARVSVMENE WKDQDLGLNQ VTFDESTMPA PVCSCTGKLR  240
QCYKWGNGGW QSSCCTMSIS MYPLPVMPNK RHARMGGRKM SGGAFTKLLS RLAAEGHDLS  300
TPVDLKDYWA KHGTNRYITI R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002597G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655749.10.0PREDICTED: barley B recombinant-like protein D
RefseqXP_015693740.10.0PREDICTED: barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLJ3MAZ10.0J3MAZ1_ORYBR; Uncharacterized protein
STRINGOB06G11850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.13e-95basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]