PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002597G0220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 322aa MW: 35579.4 Da PI: 10.0921 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 395.7 | 6.4e-121 | 18 | 321 | 15 | 301 |
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgt 105 p+++lk++ +++l+++++erd++irer++al+ekkaavaerdmaf+qrd+a+aern+a+verdn+l+al+l++++ +++++++++lsgt PH01002597G0220 18 MPQRHLKDQHSMNLLALMNERDSAIRERDHALAEKKAAVAERDMAFAQRDAAMAERNAAVVERDNALAALELARTNRLnvnNVNGFSQGSLSGT 111 37799*****************************************************************9999887667789999******** PP GAGA_bind 106 ksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesader..... 186 k+i++++qls+ ql+ds+++ +r ++++ea+pi++a+ ++ ++k++kk++ +++p+++ + +k+kk + ++k+v +++ e+ PH01002597G0220 112 KNIHHHDQLSHvqsspLQLADSPYDhVRAMHISEAYPISTAPGNIGKAKRPKKNNGQASPLKRPSGvlRKTKKATGDWKNVGMSGGGEDsarvs 205 ********999999999********99************************************999887778899999***9998764457888 PP GAGA_bind 187 .skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279 + +e+k++dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dl PH01002597G0220 206 vMENEWKDQDLGLNQVTFDESTMPAPVCSCTGKLRQCYKWGNGGWQSSCCTMSISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDL 299 899******************************************************************************************* PP GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301 s+pvDLkd+WAkHGtn+++tir PH01002597G0220 300 STPVDLKDYWAKHGTNRYITIR 321 *********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.4E-155 | 1 | 321 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.1E-96 | 15 | 321 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGNAQAEFGK FYLFQWMMPQ RHLKDQHSMN LLALMNERDS AIRERDHALA EKKAAVAERD 60 MAFAQRDAAM AERNAAVVER DNALAALELA RTNRLNVNNV NGFSQGSLSG TKNIHHHDQL 120 SHVQSSPLQL ADSPYDHVRA MHISEAYPIS TAPGNIGKAK RPKKNNGQAS PLKRPSGVLR 180 KTKKATGDWK NVGMSGGGED SARVSVMENE WKDQDLGLNQ VTFDESTMPA PVCSCTGKLR 240 QCYKWGNGGW QSSCCTMSIS MYPLPVMPNK RHARMGGRKM SGGAFTKLLS RLAAEGHDLS 300 TPVDLKDYWA KHGTNRYITI R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002597G0220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655749.1 | 0.0 | PREDICTED: barley B recombinant-like protein D | ||||
Refseq | XP_015693740.1 | 0.0 | PREDICTED: barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | J3MAZ1 | 0.0 | J3MAZ1_ORYBR; Uncharacterized protein | ||||
STRING | OB06G11850.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 3e-95 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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