PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002593G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 405aa    MW: 43369.5 Da    PI: 4.6592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002593G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19136185255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  PH01002593G0060 136 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 185
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-37136199IPR001471AP2/ERF domain
PROSITE profilePS5103223.933136193IPR001471AP2/ERF domain
CDDcd000183.15E-32136194No hitNo description
Gene3DG3DSA:3.30.730.102.2E-32136194IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22136195IPR016177DNA-binding domain
PRINTSPR003672.7E-11137148IPR001471AP2/ERF domain
PfamPF008476.8E-12137185IPR001471AP2/ERF domain
PRINTSPR003672.7E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MCGGAIISGF IPPSVAAAAK KQQRRVTADV LWPGQRRKAA ERALGDEEED FEADFREFER  60
DLSEDEAAAA GDDDDVVEEV PPPPAPAPAP AGFASGAADK AAAGVARPTV DGVPIPKLVQ  120
LDGPAARSSK RNRKNQYRGI RQRPWGKWAA EIRDPSKGVR VWLGTYNTAE EAARAYDAEA  180
RKIRGKKAKV NFPDEVLTAQ KSTLKPTVAK SAKPAPPTKT CDDEAFNHLN NADNDLFAMF  240
AFSDKKIPAK PVESVGFLPP VKPLVPAEPF GMNMLSDQSS NSFGSSDFGW DNEAMTPDYT  300
SVFVPNAVMP AYGEPPYLQG GAPKRMRNNY GAAVPSQGNG TPNLTQDMSG FDPETKYMPQ  360
LPYVESSSDG SMDSLLQNDV TQDGASNGGL WSLLDELLMV AGAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20135196163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20136196566ATERF1
3gcc_A5e-20136196566ATERF1
5wx9_A3e-191361951474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002593G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943080.0FP094308.1 Phyllostachys edulis cDNA clone: bphyem211l02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660653.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGLPERR09G08060.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.25e-27related to AP2 12