PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002585G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 266aa    MW: 30367 Da    PI: 7.9974
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002585G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.75.4e-13212258151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      kpr++W ++L    + av +L    +A+Pk+ilelm+v+ Lt+e+v+SHLQ
  PH01002585G0310 212 KPRVVWLQQL----IYAVLSLTVDAEAVPKRILELMNVEKLTRENVASHLQ 258
                      6899998887....89*****999**************************9 PP
2Response_reg77.93.6e-26231311109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+ ++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  
  PH01002585G0310  23 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNKAITALKLLRGNKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITH 114
                      799********************.***************887779*******************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  PH01002585G0310 115 GACDYLLKPVRIEELRN 131
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1321258IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.0E-4120144No hitNo description
SuperFamilySSF521721.71E-3520149IPR011006CheY-like superfamily
SMARTSM004481.3E-2921133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.40622137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.01E-2524136No hitNo description
Gene3DG3DSA:1.10.10.604.6E-12210258IPR009057Homeodomain-like
SuperFamilySSF466896.27E-5211258IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-12212258IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRMEKRKGLM VRERDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTTT NKAITALKLL  60
RGNKDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FSNRERNNLD FSKEFNKPPS ADSYHGPSQV TCGSSDQSGR  180
TSRKRKELHT EQEDEGEEND IQENDEPSAA KKPRVVWLQQ LIYAVLSLTV DAEAVPKRIL  240
ELMNVEKLTR ENVASHLQFP GVRAK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002585G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640894.11e-151two-component response regulator ORR22
SwissprotB8B3I41e-152ORR22_ORYSI; Two-component response regulator ORR22
TrEMBLA0A0D3GDJ11e-150A0A0D3GDJ1_9ORYZ; Two-component response regulator
TrEMBLA0A0E0A5X31e-150A0A0E0A5X3_9ORYZ; Two-component response regulator
TrEMBLI1Q0251e-150I1Q025_ORYGL; Two-component response regulator
STRINGOGLUM06G05540.11e-151(Oryza glumipatula)
STRINGORGLA06G0048800.11e-151(Oryza glaberrima)
STRINGOBART06G05360.11e-151(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-91response regulator 12