PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002523G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 801aa    MW: 86771.1 Da    PI: 6.0072
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002523G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-2098154157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k+
  PH01002523G0060  98 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKN 154
                      688999************************************************995 PP
2START193.31.2e-603115331206
                      HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakae 80 
                      ela +a++el+++a ++ep+W          e +n++e+ + f+++ +      + ea+r+s+vv+m + +lve+l+d+++    ++  + +a+
  PH01002523G0060 311 ELAVAAMDELIQMARLDEPLWGAPGlvdgptEVLNEEEYGRMFPRGLGprqygLKPEASRDSAVVIMSHDNLVEILMDVNQlatVFSSIVSRAS 404
                      57899****************876677899999**********998889999999*************************77777777777*** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                      t+ev+s+g      ga q+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwv
  PH01002523G0060 405 THEVLSTGvagnynGAFQVMSMEFQVPSPLVPtRESYFVRYCKHNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWV 494
                      **************************************************************98....7************************* PP

                      E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ehv++++r++h+++++lv+sgla+gak+wv tl+rqce+
  PH01002523G0060 495 EHVEVDDRSVHNIYKPLVNSGLAFGAKRWVGTLGRQCER 533
                      *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-2285153IPR009057Homeodomain-like
SuperFamilySSF466891.25E-1986155IPR009057Homeodomain-like
PROSITE profilePS5007116.97395155IPR001356Homeobox domain
SMARTSM003896.4E-2096159IPR001356Homeobox domain
CDDcd000861.56E-1997156No hitNo description
PfamPF000461.1E-1798153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084838.546302536IPR002913START domain
SuperFamilySSF559619.34E-33303535No hitNo description
CDDcd088756.22E-120306532No hitNo description
SMARTSM002344.7E-57311533IPR002913START domain
PfamPF018522.1E-49312533IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-6373527IPR023393START-like domain
SuperFamilySSF559615.49E-22555790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MTPARRMPSM IGRNGVAYGS PSALSLSQAD LLDSQHLQQA FQQQLFDQIP AAADSGDNMI  60
HGRADGLVEE FESKSCSENV DADGVSGDDQ DPNQRPRKKR YHRHTQHQIQ EMEAFFKECP  120
HPDDKQRKEL SRELGLEPLQ IKFWFQNKRT QMKNQHERQE NSQLRAENDK LRAENMRYKE  180
ALSSASCPNC GGPAALGEMS FDEHHLRVEN ARLREEASHI SQSHAYINLA NYMRIMIDRI  240
SGIAAKHVGK PMVSFPVLSS PLAVAAARSP LDLAGAYGIQ PSLGADMFGA GDLLRSVSGG  300
QLDVDKPMIV ELAVAAMDEL IQMARLDEPL WGAPGLVDGP TEVLNEEEYG RMFPRGLGPR  360
QYGLKPEASR DSAVVIMSHD NLVEILMDVN QLATVFSSIV SRASTHEVLS TGVAGNYNGA  420
FQVMSMEFQV PSPLVPTRES YFVRYCKHNS DGTWAVVDVS LDSLRPSPVL KCRRRPSGCL  480
IQEMPNGYSK VTWVEHVEVD DRSVHNIYKP LVNSGLAFGA KRWVGTLGRQ CERLASAMAS  540
NIPNGDLGVI TSVEGRKSML KLAERMVTSF CGGVTASVAH QWTTLSGSGS EDVLVMTRKS  600
VDDPGRPPGI VLNAATSFWL PVPPKRVFVF LRDESSRSEW DILSNGGAVQ EMAHIANGRD  660
HGNCVSLLRV NSANSNQSNM LILQESCTDA SGSYVVYAPV DIVAMNVVLN GGDPDYVALL  720
PSGFAILPDG PSGTVQGGGA GCAGENAGSG GSLLTVAFQI LVDSVPTAKL SLSSVATVNS  780
LIACTVERIK AAVCRESNPQ *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002523G0060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204960.0AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0E0LRZ70.0A0A0E0LRZ7_ORYPU; Uncharacterized protein
STRINGOPUNC08G04870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]