PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002498G0280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 659aa    MW: 72039.8 Da    PI: 6.9134
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002498G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.2e-24124225199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  PH01002498G0280 124 FAKTLTQSDANNGGGFSVPRYCAETIfpkldykADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 213
                      89****************************995444444..8999*********************************************..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  PH01002498G0280 214 EHGELCVGIRRA 225
                      999*******97 PP

2Auxin_resp1163.4e-38282363383
       Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      + a+++++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dpvrW nS+Wr+L+
  PH01002498G0280 282 SLAANGQPFEVVYYPRASTPEFVVKAALVQAAMRIQWCPGMRFKMAFETEDSSRISWfMGTVSSVQVADPVRWLNSPWRLLQ 363
                      67899***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-36116227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-29120227IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-21123224No hitNo description
PROSITE profilePS5086312.915124226IPR003340B3 DNA binding domain
SMARTSM010197.7E-22124226IPR003340B3 DNA binding domain
PfamPF023623.6E-22124225IPR003340B3 DNA binding domain
PfamPF065079.9E-33282363IPR010525Auxin response factor
PROSITE profilePS5174517.406594658IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MNELDEEERC LDPQLWHACA GGMVQMPPVR SRVYYFPQGH AEHANGGGGA AAELAVAAGP  60
RALPALVPCC VAGVRFLADP ETDEVYAKIR LVPVGSGEVE FREREELGPL GGDPAEAREK  120
LASFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYKADPP VQTVLAKDVH GEVWKFRHIY  180
RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF LRTEHGELCV GIRRAKRALC GSMECISGWN  240
APGYGGFSAF LKDEENKFVK APGWYVRGRG KVEIADVVEK ASLAANGQPF EVVYYPRAST  300
PEFVVKAALV QAAMRIQWCP GMRFKMAFET EDSSRISWFM GTVSSVQVAD PVRWLNSPWR  360
LLQVTWDEPD LLQNVKCVSP WLVELVSSIP PIHLGPFSPP RKKLRLPQHP DFPFDGHLLN  420
PIFHGNPLGP SNSPLRCYPD NAPAGIQGAR HAKFGLPFTD YQLNKLHLGL FQGGGFNRFD  480
AITPSSQISK GFVISSTPAH DSVSCLLTVG TPQGTEKSDD RKTPHIMLFG KAILTEQQIT  540
SSGSRETFSP GVTANSSPNG NEKKARNTPD GSGSSICIGF SSQGHEVSDL GLEAGHCKVF  600
MESEDVGRTI DLSVFGSYEE LYGQLVDMFG IEKEEIISHL RYRDAAGVVK HTGEVPFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-781138851392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002498G0280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234830.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLI1I4R90.0I1I4R9_BRADI; Auxin response factor
STRINGBRADI3G28950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]