PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002498G0280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ARF | ||||||||
Protein Properties | Length: 659aa MW: 72039.8 Da PI: 6.9134 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.2e-24 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF ++ PH01002498G0280 124 FAKTLTQSDANNGGGFSVPRYCAETIfpkldykADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 213 89****************************995444444..8999*********************************************..55 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + +el+v+++r+ PH01002498G0280 214 EHGELCVGIRRA 225 999*******97 PP | |||||||
2 | Auxin_resp | 116 | 3.4e-38 | 282 | 363 | 3 | 83 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + a+++++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dpvrW nS+Wr+L+ PH01002498G0280 282 SLAANGQPFEVVYYPRASTPEFVVKAALVQAAMRIQWCPGMRFKMAFETEDSSRISWfMGTVSSVQVADPVRWLNSPWRLLQ 363 67899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-36 | 116 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.45E-29 | 120 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.84E-21 | 123 | 224 | No hit | No description |
PROSITE profile | PS50863 | 12.915 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-22 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-22 | 124 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.9E-33 | 282 | 363 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.406 | 594 | 658 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 659 aa Download sequence Send to blast |
MNELDEEERC LDPQLWHACA GGMVQMPPVR SRVYYFPQGH AEHANGGGGA AAELAVAAGP 60 RALPALVPCC VAGVRFLADP ETDEVYAKIR LVPVGSGEVE FREREELGPL GGDPAEAREK 120 LASFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYKADPP VQTVLAKDVH GEVWKFRHIY 180 RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF LRTEHGELCV GIRRAKRALC GSMECISGWN 240 APGYGGFSAF LKDEENKFVK APGWYVRGRG KVEIADVVEK ASLAANGQPF EVVYYPRAST 300 PEFVVKAALV QAAMRIQWCP GMRFKMAFET EDSSRISWFM GTVSSVQVAD PVRWLNSPWR 360 LLQVTWDEPD LLQNVKCVSP WLVELVSSIP PIHLGPFSPP RKKLRLPQHP DFPFDGHLLN 420 PIFHGNPLGP SNSPLRCYPD NAPAGIQGAR HAKFGLPFTD YQLNKLHLGL FQGGGFNRFD 480 AITPSSQISK GFVISSTPAH DSVSCLLTVG TPQGTEKSDD RKTPHIMLFG KAILTEQQIT 540 SSGSRETFSP GVTANSSPNG NEKKARNTPD GSGSSICIGF SSQGHEVSDL GLEAGHCKVF 600 MESEDVGRTI DLSVFGSYEE LYGQLVDMFG IEKEEIISHL RYRDAAGVVK HTGEVPFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-78 | 11 | 388 | 51 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002498G0280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234830.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | I1I4R9 | 0.0 | I1I4R9_BRADI; Auxin response factor | ||||
STRING | BRADI3G28950.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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