PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002498G0270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 859aa    MW: 94225.8 Da    PI: 5.5983
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002498G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-192684357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps ++r++L +++    +++ rq+kvWFqNrR ++k+
  PH01002498G0270 26 KYVRYTPEQVEALERVYAECPKPSSTRRQQLLRECpilaNIEPRQIKVWFQNRRCRDKQ 84
                     5678****************************************************996 PP

2START160.31.4e-501643702203
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l
  PH01002498G0270 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-PWFRDCRSLEVFTMLPAGngGTIEL 256
                      789*******************************************************9999999999.****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  PH01002498G0270 257 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGAPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 350
                      ***************************************8877777688899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXX CS
            START 184 lvksglaegaktwvatlqrq 203
                      l++s+++ ++k+++ +l++ 
  PH01002498G0270 351 LYESSRVVAQKMTTVALRHI 370
                      ************99888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-19881IPR009057Homeodomain-like
PROSITE profilePS5007115.6942185IPR001356Homeobox domain
SMARTSM003894.5E-162389IPR001356Homeobox domain
SuperFamilySSF466891.2E-162589IPR009057Homeodomain-like
CDDcd000865.16E-172686No hitNo description
PfamPF000461.8E-162784IPR001356Homeobox domain
CDDcd146861.87E-678117No hitNo description
Gene3DG3DSA:1.20.5.1704.6E-482132No hitNo description
PROSITE profilePS5084827.642154382IPR002913START domain
CDDcd088751.34E-77158374No hitNo description
SMARTSM002342.5E-37163373IPR002913START domain
SuperFamilySSF559619.75E-36163375No hitNo description
Gene3DG3DSA:3.30.530.204.3E-21163347IPR023393START-like domain
PfamPF018521.4E-48164370IPR002913START domain
PfamPF086702.0E-48715857IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MAAAVAMRSG SGSDGGYDKA GMDSGKYVRY TPEQVEALER VYAECPKPSS TRRQQLLREC  60
PILANIEPRQ IKVWFQNRRC RDKQRKEASR LQAVNRKLTA MNKLLMEENE RLQKQVSQLV  120
HENAYMKQQL QNPSLANDTS CESNVTTPQN PLKDASNPSG LLSIAEETLT EFLSKATGTA  180
VDWVQMPGMK PGPDSFGIVA ISHGCRGVAA RACGLVNLEP TKIVEILKDR PPWFRDCRSL  240
EVFTMLPAGN GGTIELVYMQ MYAPTTLVPA RDFWTLRYTT TMEDGSLVVC ERSLSGSGGA  300
PSTASAQQFV RAEMLPSGYL VRPCEGGGSI VHIVDHLDLE AWSVPEVLRP LYESSRVVAQ  360
KMTTVALRHI RQIAQETSGE VVYALGRQPA VLRTFSQRLS RGFNDAISGF NDDGWSVMGG  420
DGTEDVIIAC NSKKIRNNNT AANAFGAPGG VICAKASMLL QSVPPAVLVR FLREHRSEWA  480
DYNFDAYSAS ALKTSPCSLP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR LEGQALTHDE  540
GLLSRDIHLL QLCTGIDDKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI PLDMKTVECF  600
SLILFVLNLT TKILPQDGAP TGRTLDLASS LEVGSTTQQA SGGASLDDSN LRSVLTIAFQ  660
FPYEMHLQDS VATLARQYVR SVVSAVQRVS MAISPSPSGV NAGQKIISGF PEAATLARWV  720
CQSYQFHLGV ELLRQADEAG ESLLRMLWDY EDAILCCSFK EKPVFTFANE MGLNMLETSL  780
VALQDLSLDK IFDEAGRKAL YSEIPKLMEQ GYVYLPAGVC LSGMGRHVAF EQAVAWKVLG  840
EDNNVHCLAF CFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002498G0270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0138030.0DQ013803.1 Phyllostachys praecox HB1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0E0M8V00.0A0A0E0M8V0_ORYPU; Uncharacterized protein
STRINGOPUNC10G11850.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein