PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002498G0270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 859aa MW: 94225.8 Da PI: 5.5983 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.5e-19 | 26 | 84 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r++L +++ +++ rq+kvWFqNrR ++k+ PH01002498G0270 26 KYVRYTPEQVEALERVYAECPKPSSTRRQQLLRECpilaNIEPRQIKVWFQNRRCRDKQ 84 5678****************************************************996 PP | |||||||
2 | START | 160.3 | 1.4e-50 | 164 | 370 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ + g g+++l PH01002498G0270 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-PWFRDCRSLEVFTMLPAGngGTIEL 256 789*******************************************************9999999999.****************9999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+ PH01002498G0270 257 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGAPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 350 ***************************************8877777688899****************************************** PP HHHHHHHHHHHHHHHHTXXX CS START 184 lvksglaegaktwvatlqrq 203 l++s+++ ++k+++ +l++ PH01002498G0270 351 LYESSRVVAQKMTTVALRHI 370 ************99888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-19 | 8 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.694 | 21 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-16 | 23 | 89 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-16 | 25 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.16E-17 | 26 | 86 | No hit | No description |
Pfam | PF00046 | 1.8E-16 | 27 | 84 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.87E-6 | 78 | 117 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.6E-4 | 82 | 132 | No hit | No description |
PROSITE profile | PS50848 | 27.642 | 154 | 382 | IPR002913 | START domain |
CDD | cd08875 | 1.34E-77 | 158 | 374 | No hit | No description |
SMART | SM00234 | 2.5E-37 | 163 | 373 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.75E-36 | 163 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.3E-21 | 163 | 347 | IPR023393 | START-like domain |
Pfam | PF01852 | 1.4E-48 | 164 | 370 | IPR002913 | START domain |
Pfam | PF08670 | 2.0E-48 | 715 | 857 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MAAAVAMRSG SGSDGGYDKA GMDSGKYVRY TPEQVEALER VYAECPKPSS TRRQQLLREC 60 PILANIEPRQ IKVWFQNRRC RDKQRKEASR LQAVNRKLTA MNKLLMEENE RLQKQVSQLV 120 HENAYMKQQL QNPSLANDTS CESNVTTPQN PLKDASNPSG LLSIAEETLT EFLSKATGTA 180 VDWVQMPGMK PGPDSFGIVA ISHGCRGVAA RACGLVNLEP TKIVEILKDR PPWFRDCRSL 240 EVFTMLPAGN GGTIELVYMQ MYAPTTLVPA RDFWTLRYTT TMEDGSLVVC ERSLSGSGGA 300 PSTASAQQFV RAEMLPSGYL VRPCEGGGSI VHIVDHLDLE AWSVPEVLRP LYESSRVVAQ 360 KMTTVALRHI RQIAQETSGE VVYALGRQPA VLRTFSQRLS RGFNDAISGF NDDGWSVMGG 420 DGTEDVIIAC NSKKIRNNNT AANAFGAPGG VICAKASMLL QSVPPAVLVR FLREHRSEWA 480 DYNFDAYSAS ALKTSPCSLP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR LEGQALTHDE 540 GLLSRDIHLL QLCTGIDDKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI PLDMKTVECF 600 SLILFVLNLT TKILPQDGAP TGRTLDLASS LEVGSTTQQA SGGASLDDSN LRSVLTIAFQ 660 FPYEMHLQDS VATLARQYVR SVVSAVQRVS MAISPSPSGV NAGQKIISGF PEAATLARWV 720 CQSYQFHLGV ELLRQADEAG ESLLRMLWDY EDAILCCSFK EKPVFTFANE MGLNMLETSL 780 VALQDLSLDK IFDEAGRKAL YSEIPKLMEQ GYVYLPAGVC LSGMGRHVAF EQAVAWKVLG 840 EDNNVHCLAF CFVNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002498G0270 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ013803 | 0.0 | DQ013803.1 Phyllostachys praecox HB1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614901.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0E0M8V0 | 0.0 | A0A0E0M8V0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G11850.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |