PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002473G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 337aa    MW: 36124 Da    PI: 10.1861
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002473G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19174207134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  PH01002473G0050 174 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 207
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.09E-13167208No hitNo description
SMARTSM004015.2E-19168220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466172204IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-15172207IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.92E-15173210No hitNo description
PROSITE patternPS003440174199IPR000679Zinc finger, GATA-type
PfamPF003204.7E-17174207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSAIYMSQLS TTLPLMEGDR HHQGHFQAFT LPKDPPILFP FVVNNSSPSD SSLIYGSDHQ  60
LRQHQAILES QHMIGGSSSV FATPFPTVES IRDDMIERSS YDPYDIEKRQ ATSGSVQTGK  120
WKAPAAAKTR ITRKTSDPGS IGGAAKKPRR RAHAYEDGNH SSSMNQPLGV IRVCSDCNTT  180
KTPLWRSGPR GPKSLCNACG IRQRKARRAM MASGASTEGA KVGTPSDAAT AHPKVKKEKR  240
ADVDRSLPFK KRCKLVVQDH TAGTAAAADD KATVKSAEVV AAVPTRDLVD SIGANWRKSS  300
AAATACFRSS PAFAVQDEIT DAAMLLMTLS CGLVRG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002473G0050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563721.11e-141GATA transcription factor 21
SwissprotQ6YW482e-86CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A3B6SJC11e-145A0A3B6SJC1_WHEAT; Uncharacterized protein
TrEMBLA0A446YMA11e-145A0A446YMA1_TRITD; Uncharacterized protein
STRINGMLOC_10364.11e-144(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-21GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]