PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002430G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 356aa MW: 39610.9 Da PI: 8.1774

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002430G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	4.1e-34	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPkti+++m+v+gLtl+h+kSHLQkYRl PH01002430G0200 47 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRFMGVPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.663	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-32	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-18	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.9E-25	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-10	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-25	148	195	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MYHHQQQLQS NSQLLSSRQT FPPERHLLLQ GGTIPAESGL VLSTDAKPRL KWTPELHDRF 60 VEAVNQLGGP DKATPKTIMR FMGVPGLTLY HLKSHLQKYR LSKNLHAQAN VGNARNVVAC 120 TIATDKPSEG IGPPVSHLNL GTQTNKSMPI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA 180 QGKYLQSVLE KAQETLAKQN AGSVGLETAK MQLSELVSKV STECLHNAFT GFEEIEGSPM 240 LQGHTMQLGD GSVDSCLTAC ESSQKDQDIL SISLSAKKGK EIRGMAFDPQ VKERGHEDLF 300 LEKLSRRPPN HQERRERRDG FSMSCQTAKL DLNINDTNDG PQHCKKFDLN GFSWA*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MYHHQQQLQS NSQLLSSRQT FPPERHLLLQ GGTIPAESGL VLSTDAKPRL KWTPELHDRF  60
VEAVNQLGGP DKATPKTIMR FMGVPGLTLY HLKSHLQKYR LSKNLHAQAN VGNARNVVAC  120
TIATDKPSEG IGPPVSHLNL GTQTNKSMPI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAQETLAKQN AGSVGLETAK MQLSELVSKV STECLHNAFT GFEEIEGSPM  240
LQGHTMQLGD GSVDSCLTAC ESSQKDQDIL SISLSAKKGK EIRGMAFDPQ VKERGHEDLF  300
LEKLSRRPPN HQERRERRDG FSMSCQTAKL DLNINDTNDG PQHCKKFDLN GFSWA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002430G0200

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558005.1	0.0	myb-related protein 2
Refseq	XP_015627784.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-106	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0A9CY08	0.0	A0A0A9CY08_ARUDO; Uncharacterized protein
STRING	OGLUM03G15970.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-105	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]