PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002350G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BES1
Protein Properties Length: 612aa    MW: 69033.5 Da    PI: 6.3338
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002350G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822123.72.4e-3859134176
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 
                      gg++r++  +E+E++k+RER+RRai+a+i++GLR++ ny+l++raD+neV++AL+reAGwvv +DGtt++ +s  +
  PH01002350G0210  59 GGGRRSRAREEKERTKLRERQRRAITARILTGLRRHSNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSCAT 134
                      57888999999**********************************************************9665444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.4E-3460137IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.92E-153154556IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.6E-101157355IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.7E-62163356IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-34194208IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-34215233IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-34237258IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060241249IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007501.7E-34330352IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.802.0E-59356526IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MQRLQASEDD DEEMAVKEED DCLDDDEHAE ARYLQVSPQE QGAMLAAVAM APTATVSGGG  60
GRRSRAREEK ERTKLRERQR RAITARILTG LRRHSNYNLR VRADINEVIA ALAREAGWVV  120
LPDGTTFPSS SCATQPQPQP QVADVVPRPP ERDFAGTAYV PVYVMLPLGV VNGNGEVVDA  180
DGLVGQLRVL KAAGVDGVMV DCWWGNVEAH RPQEYNWTGY KHLFHMIREL KLKLQVVMSF  240
HECGGNVGDD VSIPLPNWVT EIGRSNPDIY FTDRAGRRNT ECLSWGIDKE RVLQGRTAVE  300
VYFDYMRSFR VEFDEYFEDG IISEIEIGLG ACGELRYPSY PAKHGWKYPG IGEFQVLVDH  360
ADRVLMLARL AFEGSNIAVK VSGVHWWYKT ASHAAELTAG FYNPCNRDGY APIAAILKKH  420
GAALNFTCVE LRTMDQHEVF PEAFADPEGL VLNAAWDAGI PVASENALPC YDRDGFNKIL  480
ENAKPLNDPD GRHLLGFTYL RLSKVLFERT NFLEFERFVK RMHVSTRLVR PYWYKPSTTL  540
VYGFNQVTLT ILIYTFDHTG LCLRPQWHVA LIRLFRLHWS KPSTTLVYGF DQITSTILIY  600
AFNHTGLRLL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wqu_A1e-11815952312444Beta-amylase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtLow beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002350G0210
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly by cold stress. {ECO:0000269|PubMed:16297066}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703000.0AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026656977.10.0beta-amylase 2, chloroplastic isoform X3
SwissprotO652580.0BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBLA0A0E0M4R00.0A0A0E0M4R0_ORYPU; Beta-amylase
STRINGOPUNC09G18510.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-168beta-amylase 7
Publications ? help Back to Top
  1. Smith AM,Zeeman SC,Smith SM
    Starch degradation.
    Annu Rev Plant Biol, 2005. 56: p. 73-98
    [PMID:15862090]
  2. Lundmark M,Cavaco AM,Trevanion S,Hurry V
    Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters.
    Plant Cell Environ., 2006. 29(9): p. 1703-14
    [PMID:16913860]
  3. Li J, et al.
    Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein.
    Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8
    [PMID:19664588]
  4. Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM
    Starch turnover in developing oilseed embryos.
    New Phytol., 2010. 187(3): p. 791-804
    [PMID:20546137]
  5. Monroe JD, et al.
    Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics.
    Plant Physiol., 2017. 175(4): p. 1525-1535
    [PMID:29066669]