PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002325G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 449aa    MW: 47902.9 Da    PI: 7.3433
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002325G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.99.3e-87914474374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                       L ++A+a ++g+   a+++Larl+++  p g+p+ R a+yf+eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+ +f+++t
  PH01002325G0040  91 ELAAAAKAAEAGNSIDAREILARLNHQLPPLGKPFLRSASYFKEALLLALAD-----GNHGASRLTSPLDVALKLAAYKSFSDLSPVTQFANFT 179
                      6999************************************************.....555566777777899********************** PP

             GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      a qa+l++++g+   ++H++Dfd+s G+QW+++lq+La+R+       p l++T+++s++s++  el+ t++ L++fA+ lg+pfefnv+   +
  PH01002325G0040 180 ATQALLDEIAGSpaACIHVVDFDLSVGGQWASFLQELAQRRgsggVALPLLKLTAFVSSASHHPLELHLTQDILSQFAADLGIPFEFNVV---S 270
                      ***********99999************************965444489****************************************8...8 PP

             GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      l++ +l +L     +E++aV+l +          +l    + +L+lvk+lsPk+vv +++  d+ + +F ++fl++++ ++ l+dsl+a  + +
  PH01002325G0040 271 LDACSLADLISPAgNEVVAVSLPVGCSARA---PPL----HVILRLVKQLSPKIVVAMDHGGDRADLPFSQHFLSCFQSCVFLLDSLDAA-GID 356
                      88888888844447*********9777665...444....45*********************************************888.789 PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                      ++ + k+Er++++++++++v    ++      +++ Wr+ + + GF+pvpls+ a++qa++ll++v+++g++ve++ g l+l+W++ +Lvs+Sa
  PH01002325G0040 357 ADSACKIERFVIQPRVEDAVLGWRKA-----DKAMAWRNVFAATGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGGGLMLYWQRSELVSISA 445
                      9*******************976665.....7889*********************************************************** PP

             GRAS 373 Wr 374
                      Wr
  PH01002325G0040 446 WR 447
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.44462427IPR005202Transcription factor GRAS
PfamPF035143.2E-8491447IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSLVQLKERR GAMGSAYAKG TKRVAGAAQA KGRRGATEFG CEDDASEGVE EGAEWVKGRR  60
PLGAIAVERR SHTHTHQGET VGAVQQQLLG ELAAAAKAAE AGNSIDAREI LARLNHQLPP  120
LGKPFLRSAS YFKEALLLAL ADGNHGASRL TSPLDVALKL AAYKSFSDLS PVTQFANFTA  180
TQALLDEIAG SPAACIHVVD FDLSVGGQWA SFLQELAQRR GSGGVALPLL KLTAFVSSAS  240
HHPLELHLTQ DILSQFAADL GIPFEFNVVS LDACSLADLI SPAGNEVVAV SLPVGCSARA  300
PPLHVILRLV KQLSPKIVVA MDHGGDRADL PFSQHFLSCF QSCVFLLDSL DAAGIDADSA  360
CKIERFVIQP RVEDAVLGWR KADKAMAWRN VFAATGFTPV PLSNLAEAQA DCLLKRVQVR  420
GFHVEKRGGG LMLYWQRSEL VSISAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2612244737375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002325G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570043.10.0scarecrow-like protein 27
RefseqXP_020185793.10.0scarecrow-like protein 6
TrEMBLA0A446WGH80.0A0A446WGH8_TRITD; Uncharacterized protein
STRINGEMT262580.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-93GRAS family protein