PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002279G0250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 28733 Da PI: 7.9788 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++aa+++l+g PH01002279G0250 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALDAARAYDAAARALYG 89 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-31 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.705 | 40 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 41 | 97 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.56E-16 | 41 | 72 | No hit | No description |
PRINTS | PR00367 | 1.9E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-12 | 41 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-28 | 41 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MASSSNGKGK QQSSKKCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG KWVAEIREPN 60 RGARLWLGTF STALDAARAY DAAARALYGD CARLNVSASG SPSPDTTAGL QPRPPHINIS 120 TAAGGAGGGH HQYKPSAPGT PCCSADASSN SNSNSNSNSS VTMGGSPTDN NSVSMAMRTE 180 TTQYGMNTMQ MTREEAAEEF EAYVTRLPKA EDFGLEGFQE VLDEAGGGIG IWDLTICPDM 240 MPAASTPPPK QQPDMVVDDA GLQPQSQPLA W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-14 | 41 | 95 | 3 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002279G0250 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 4e-88 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 4e-88 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 4e-88 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 4e-88 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 4e-88 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 4e-88 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651102.1 | 6e-78 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 8e-79 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A0E0EP68 | 1e-76 | A0A0E0EP68_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G18700.1 | 2e-77 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 1e-28 | ERF family protein |
Publications ? help Back to Top | |||
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