PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002276G0270

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 345aa MW: 37493.4 Da PI: 7.3854

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002276G0270	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.6	7e-55	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv++ ++ + +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk++++ PH01002276G0270 11 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVSEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDIFR 103 79***********************999.67***********8888899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg+kktLvfy+grapkgek+ Wvmheyrl PH01002276G0270 104 -GKVLVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 136 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-63	7	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.288	11	168	IPR003441	NAC domain
Pfam	PF02365	1.6E-29	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MEHDEQHAMD LPPGFRFHPT DEELITHYLA KKVADARFAA LAVSEADLNK CEPWDLPSLA 60 KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGKVLVGM KKTLVFYTGR 120 APKGEKSGWV MHEYRLDGKG KLHAATCGLP SKTAASKNEW VLCRVFNKSL LGVVSLSSAA 180 AAAKKGAVEM GKIGSSMADD ASISALPPLM DMSGAAGVDQ VAHVTCFSNA LEGQFFNPTA 240 AHAGGRTDHH SLAASSPFLE SFTQYGEQLH HGVSLVQLLE SNGYGGLVEM VGKQQPACKG 300 ERERLSASQD TGLTSDVNPE ISSSSGQKFD HENALWSYYA LSPAR

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MEHDEQHAMD LPPGFRFHPT DEELITHYLA KKVADARFAA LAVSEADLNK CEPWDLPSLA  60
KMGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGKVLVGM KKTLVFYTGR  120
APKGEKSGWV MHEYRLDGKG KLHAATCGLP SKTAASKNEW VLCRVFNKSL LGVVSLSSAA  180
AAAKKGAVEM GKIGSSMADD ASISALPPLM DMSGAAGVDQ VAHVTCFSNA LEGQFFNPTA  240
AHAGGRTDHH SLAASSPFLE SFTQYGEQLH HGVSLVQLLE SNGYGGLVEM VGKQQPACKG  300
ERERLSASQD TGLTSDVNPE ISSSSGQKFD HENALWSYYA LSPAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-54	2	169	6	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002276G0270

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099527	0.0	FP099527.1 Phyllostachys edulis cDNA clone: bphyem118k06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633922.1	1e-178	NAC domain-containing protein 92
Refseq	XP_015633924.1	1e-178	NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-94	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D9ZLQ5	1e-177	A0A0D9ZLQ5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H1Q2	1e-177	A0A0E0H1Q2_ORYNI; Uncharacterized protein
TrEMBL	I1PLX8	1e-177	I1PLX8_ORYGL; Uncharacterized protein
STRING	OGLUM04G14830.2	1e-177	(Oryza glumipatula)
STRING	ONIVA04G13100.2	1e-177	(Oryza nivara)
STRING	ORGLA04G0119700.1	1e-177	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-93	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]