PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002276G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 318aa    MW: 34243.4 Da    PI: 8.2565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002276G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.3e-06173190926
                      GGGTS--TTTTT-SS-SS CS
          zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                      ++++G+C+ G+ C++ H+
  PH01002276G0050 173 WYKMGFCPNGPDCRYRHV 190
                      99*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-56187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3246188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-56388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-66386IPR000571Zinc finger, CCCH-type
SMARTSM003560.03689115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.59689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.53157192IPR000571Zinc finger, CCCH-type
SMARTSM003560.48170191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDGDGGLSF DFEGGVDAAG AGASTVVGAP TSAVPSSDAP APAADGGGPA PPHGHGRGRG  60
SFRQTVCRHW LRGLCMKGDS CGFLHQYDKA RMPVCRFFRL YGECREQDCV YKHSDEDIKE  120
CNMVSQNSML SLVGGRVGAW MGIISLNSRN GIAIGVLCAS VICRVRVVFS WSWYKMGFCP  180
NGPDCRYRHV KQPGPPPPVE EVFQKLQQMN LFNYGPSNRF YQHRGNNYNH QGEKPQAQQG  240
CVPHNQNSAA SAAPVVQQPD VQHVQTANSQ IVPPPPQQQQ QQQQNTQVQG APNGLSNQAT  300
RTATPLPQGQ SRCVGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C3e-20818912167Cleavage and polyadenylation specificity factor subunit 4
6fbs_C2e-20818911166Cleavage and polyadenylation specificity factor subunit 4
6fuw_C2e-20818911166Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002276G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926956.18e-88zinc finger CCCH domain-containing protein 45 isoform X1
SwissprotQ0DA501e-68C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A2H3WXN82e-85A0A2H3WXN8_PHODC; zinc finger CCCH domain-containing protein 45-like isoform X2
STRINGXP_008775232.13e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428