PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002274G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 463aa MW: 49571.5 Da PI: 6.5157 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.4 | 1.2e-31 | 266 | 321 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ PH01002274G0070 266 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 321 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.539 | 263 | 323 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.78E-17 | 264 | 324 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 264 | 324 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-26 | 266 | 321 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-7 | 268 | 319 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MDSSPSDLTL DYKPNGGGGT VAGAYPMIIG KQAPLVDHHL TTEQATQKLQ ESLSRLEEER 60 LKIDAFRREL PLCMQLLNHA MEAYRQQLEA YQMGSQGGAA AARRPLVLEE FIPLKNIGID 120 EADKPGNPPS EKASWMVSAQ LWNGPAADTA ANGPQTPKEH SEHPLDTSPE FSALDGSAGQ 180 RNGGAFLPFS KDKAMAESAA LPKLALAPAE KDAIAGAGGE VDKMQYHDAG SNNGVASRRD 240 VQNGAKPTST TPEGQAAPMP PQSHRKARRC WSPELHRRFV NALQILGGAQ VATPKQIREL 300 MKVDGLTNDE VKSHLQKYRL HTRRPMTAPP TAAPAAPHLV VLGGIWVPPE YATQAAAPTI 360 YGAHPATQPH YTAAVAAQGY YQSPAAVHHP AAAMVHRAVA PPPPPAYKAA TRVVSPESEG 420 RGSGGGRERW ESIEEEREDD DDEEMAAAKA DAEENARRCR SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002274G0070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086572 | 1e-115 | BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819732.1 | 0.0 | transcription factor NIGTH1 | ||||
Swissprot | Q5VRW2 | 1e-154 | NOH1_ORYSJ; Transcription factor NIGTH1 | ||||
TrEMBL | A0A2S3HY88 | 0.0 | A0A2S3HY88_9POAL; Uncharacterized protein | ||||
STRING | Sb03g004090.1 | 1e-178 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9773 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 5e-78 | G2-like family protein |
Publications ? help Back to Top | |||
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