PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002245G0380

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 404aa MW: 42967 Da PI: 4.3046

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002245G0380	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.9	3e-17	8	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkya....tgk...rknr.atk. 79 + +f F+P+d el++ +L++k++g++l++ i++vd+y++ P +L + + +++ + wyfFs+ + +g rk+r + + PH01002245G0380 8 ATCFAFRPQDRELIDLFLRPKLAGQPLHA-GLIHDVDVYSAAPDKLVAeltcapgTGDGDARVWYFFSPVHYVGGakiaRGGgpaRKSRtVCAe 100 5689*********************99.89**********74466666433446679*99865543333333455666633332 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +W++ k+v++ +++ g + + + ++++ +k W+m ey++ PH01002245G0380 101 gNEFWHSETGPKPVKD--SAAGGKFQKFSYKVKTDSGVVKPGWLMVEYSI 148 366899999*98..556677777888766777778*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-27	4	166	IPR003441	NAC domain
PROSITE profile	PS51005	26.096	7	166	IPR003441	NAC domain
Pfam	PF02365	3.9E-12	11	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MAQAAGLATC FAFRPQDREL IDLFLRPKLA GQPLHAGLIH DVDVYSAAPD KLVAELTCAP 60 GTGDGDARVW YFFSPVHYVG GAKIARGGGP ARKSRTVCAE GNEFWHSETG PKPVKDSAAG 120 GKFQKFSYKV KTDSGVVKPG WLMVEYSIDS QEHGGADLVL CKVYRSPRAP PSLRASSTTS 180 AALSESNCKK RKAAGDHPEA PPPCSARRQT TDEEDDDVFA ERLERALTSD CHVPEDADDH 240 HPAEASPCSL PWQMNEIEEM LEIFEREGDL ISFFGLDQPD LMSDDGLDEP GAPPPAEPEP 300 DQTTAVHGPC PDDALQVAAA CLDEEEGEQL VLDDEPAPGE FIGCLPCPPS EPAYIEALLS 360 ASGDVVMPWP AVPAAAVPRL CGGDHLSPAP LRTGSFGAFP AVC*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MAQAAGLATC FAFRPQDREL IDLFLRPKLA GQPLHAGLIH DVDVYSAAPD KLVAELTCAP  60
GTGDGDARVW YFFSPVHYVG GAKIARGGGP ARKSRTVCAE GNEFWHSETG PKPVKDSAAG  120
GKFQKFSYKV KTDSGVVKPG WLMVEYSIDS QEHGGADLVL CKVYRSPRAP PSLRASSTTS  180
AALSESNCKK RKAAGDHPEA PPPCSARRQT TDEEDDDVFA ERLERALTSD CHVPEDADDH  240
HPAEASPCSL PWQMNEIEEM LEIFEREGDL ISFFGLDQPD LMSDDGLDEP GAPPPAEPEP  300
DQTTAVHGPC PDDALQVAAA CLDEEEGEQL VLDDEPAPGE FIGCLPCPPS EPAYIEALLS  360
ASGDVVMPWP AVPAAAVPRL CGGDHLSPAP LRTGSFGAFP AVC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002245G0380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3FQZ3	2e-45	A0A0D3FQZ3_9ORYZ; Uncharacterized protein
STRING	OBART03G39800.1	3e-46	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	6e-14	NAC domain containing protein 63