PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01002178G0270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 119aa MW: 13585.6 Da PI: 11.3764 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.9 | 4.4e-08 | 33 | 77 | 6 | 50 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + +r++ NR +A+ R+RK+ ++ L v+ L eN++L+ l+ PH01002178G0270 33 KRKRRMENRRSAKIARLRKRRHLDDLISQVDLLAMENQRLITVLN 77 5689999*********************************96655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-4 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.519 | 33 | 72 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.94E-8 | 33 | 82 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.3E-6 | 33 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 119 aa Download sequence Send to blast |
MGLPFGTSSS SSHGTQSAGS EGDMELQARM DLKRKRRMEN RRSAKIARLR KRRHLDDLIS 60 QVDLLAMENQ RLITVLNITA QSNAAGEAQN SVLRTQMMEL ENRLRALHDF LLHEFKPVR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 34 | 52 | KRRMENRRSAKIARLRKRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01002178G0270 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP093319 | 0.0 | FP093319.1 Phyllostachys edulis cDNA clone: bphylf037b05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822603.1 | 1e-40 | bZIP transcription factor 44-like isoform X1 | ||||
TrEMBL | A0A2S3I209 | 2e-39 | A0A2S3I209_9POAL; Uncharacterized protein | ||||
STRING | ORUFI08G13590.1 | 1e-39 | (Oryza rufipogon) | ||||
STRING | ORGLA08G0106400.1 | 1e-39 | (Oryza glaberrima) | ||||
STRING | OBART08G12060.1 | 1e-39 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34590.1 | 6e-18 | G-box binding factor 6 |