PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002169G0420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRF | ||||||||
Protein Properties | Length: 216aa MW: 22809 Da PI: 9.8562 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81 | 1.1e-25 | 133 | 177 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ PH01002169G0420 133 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 177 69****************************************997 PP | |||||||
2 | QLQ | 47 | 7.7e-17 | 68 | 103 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T +Q q+L++Q+l+y+y+a ++PvP +L+++i+k PH01002169G0420 68 GLTFMQQQELEHQVLIYRYFAVGAPVPVHLVLPIWK 103 5899*******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-4 | 67 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.857 | 68 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.3E-9 | 70 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.701 | 133 | 177 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-21 | 134 | 176 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAEEKEADSP QPPSKLPRLS CADPNAGAVT MAASSPLVLG LGLGLGGNSC SERGVEAPAA 60 HKATAPSGLT FMQQQELEHQ VLIYRYFAVG APVPVHLVLP IWKSVAASSF GPHRFPSLMG 120 LGSLCFDYRS SMEPEPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEASAA 180 TTPAPNGGGS SISASPRGLG FSPTSVLLAH STARAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002169G0420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099737 | 0.0 | FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624932.1 | 1e-109 | growth-regulating factor 10 isoform X2 | ||||
Swissprot | Q6EPP9 | 1e-108 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A0E0K3L7 | 1e-111 | A0A0E0K3L7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G25570.1 | 1e-112 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 9e-38 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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