PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002169G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 193aa    MW: 20668.9 Da    PI: 5.0834
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002169G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1852102155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + ykGVr++   grWv+e+r+p   g ++r++lg+f tae+Aa+a++ a+++l+g
  PH01002169G0130  52 PVYKGVRRRN-LGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 102
                      68*****887.9******9996..33.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1352102IPR001471AP2/ERF domain
PROSITE profilePS5103222.10253110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3153112IPR001471AP2/ERF domain
SMARTSM003801.5E-2853116IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2153111IPR016177DNA-binding domain
PRINTSPR003671.1E-85465IPR001471AP2/ERF domain
CDDcd000183.07E-2154112No hitNo description
PRINTSPR003671.1E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDVAALSNDY SSGTPSPVAA DGDEGSSSYM TVSSAPPKRR AGRTKFKETR HPVYKGVRRR  60
NLGRWVCEVR EPHGKQRIWL GTFETAEMAA RAHDVAALAL RGRAACLNFA DSPRRLRGNA  120
AAEEAAAEPG ASSSAAQCVG DPYYEVDDRL DFGMQGYLDM AQGMLIDPPS MAGSSASGCD  180
DDDDGEVRLW SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002169G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8967071e-160JN896707.1 Neosinocalamus affinis CRT/DRE binding factor 1 (CBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953437.22e-94dehydration-responsive element-binding protein 1G
SwissprotQ6EP779e-92DRE1G_ORYSJ; Dehydration-responsive element-binding protein 1G
TrEMBLV5RFT97e-98V5RFT9_9POAL; CRT/DRE binding factor 1
STRINGOPUNC02G25480.13e-95(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-33dehydration response element B1A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]