PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002160G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 306aa    MW: 33211.3 Da    PI: 6.3792
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002160G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1413722886
         trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                       +W+ vs++ r++g+er+p qC+++w nl+++ kki ++ek++ ++++ +++  f +++
  PH01002160G0050 13 RLKWAVVSAYSRRHGVERGPMQCQKRWGNLSWDLKKIVAWEKNGaAAGEAQQHESFWDMR 72
                     679*****************************************6688889999999985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEQRGLRSPQ PVRLKWAVVS AYSRRHGVER GPMQCQKRWG NLSWDLKKIV AWEKNGAAAG  60
EAQQHESFWD MRGEQRRARQ LPSSFDREVF NALVGAAAKL PPDLGEELAE GDDEADGQPP  120
MMVMPISATK YEPPASSQHE CSDPVTERAK KAGAASDKNS TSQQDGGFKD SEATFGPGAG  180
AEGTTTATAT ATTTSIGKQV IEALETGNRM HADQLEAQKA SWDMDREQRK ALLACLSKLA  240
DAVGRIADKL DQSIRLSAYV IDLLLLLARD QSVRLSAITT LKSVQVNGIQ PEHFVGPKMR  300
LEGGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002160G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126093e-61CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.11e-103trihelix transcription factor ASR3
TrEMBLA0A0E0CCG01e-107A0A0E0CCG0_9ORYZ; Uncharacterized protein
STRINGPavir.Ea03865.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-32Trihelix family protein