PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002148G0200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 931aa MW: 102981 Da PI: 9.5682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 394 | 438 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g++Rt+ qc sr+q PH01002148G0200 394 NAWTAREEKRLILIVQERGMHNWINIAVALGTHRTPFQCLSRYQR 438 68*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 35.4 | 2.5e-11 | 447 | 491 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l v+ +G + W ++++ + gR ++qc +rw+k l PH01002148G0200 447 RSWTKEEDHQLQASVETFGCN-WQLVSASLV-GRIGNQCSNRWRKTL 491 68*****************88.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 46.4 | 9e-15 | 499 | 544 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l vk lG+g+W++Ia+ ++ gRt qc +rw+++l PH01002148G0200 499 GRWSLDEDKRLMVSVKILGSGSWNKIAQFVP-GRTQSQCNERWRNVL 544 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.9 | 7.1e-11 | 551 | 593 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+W +eEd +l+ v + G+ W++Ia m +Rt+++c rw+ PH01002148G0200 551 GKWRPEEDSKLLASVSEVGPC-WSKIAGAMIPHRTDNMCMRRWR 593 79*****************88.*****99999***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0016 | 293 | 389 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 296 | 312 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00151 | 358 | 385 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 359 | 400 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.599 | 362 | 385 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 8.722 | 388 | 440 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-6 | 392 | 442 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.93E-21 | 392 | 487 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 6.1E-12 | 396 | 457 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 401 | 448 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.321 | 441 | 495 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-10 | 445 | 493 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-7 | 448 | 491 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-15 | 449 | 491 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-17 | 495 | 544 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.624 | 496 | 548 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-11 | 497 | 546 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.31E-25 | 497 | 592 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.9E-14 | 499 | 544 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-10 | 500 | 544 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-15 | 545 | 599 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-9 | 549 | 598 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.011 | 551 | 600 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.2E-9 | 551 | 593 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.63E-9 | 552 | 593 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 931 aa Download sequence Send to blast |
MDFYSDDSDP DIDEDLQKDL DALRRSCILS GNDPEAAVAQ VSSYLSAPAS FTSAVAAADN 60 GSSDDDDEDL ALVRSIRENL HLNKASPSSP LPDPASSPRP ICVWPPSDTD DDDDDLETLH 120 AIQRRFSHYH SGTSTGSPKN MKTEASKGGD RELIAHRPGE EFDGEKQNAK ALSQTGFPKA 180 ALLLVDALKK NRTCQKFIRR KMINIEAKIE ENKDLRDRVK CLMDYQLSCR KSFGRILCQK 240 EDPRVRLISS RKPSAQSSKN KDKKIPALFL GPAENPHVSK YKMVLRQFPV LLQKQLWSDV 300 EKDKLAKGIK QQYQETLILD SMNNGSSTGD FSAVDMAYAL TNTAGNFEVT PESLRSVLPL 360 INWDKISAMY LPGRSGAECE SRWLNCDDPL INHNAWTARE EKRLILIVQE RGMHNWINIA 420 VALGTHRTPF QCLSRYQRSL NPHILKRSWT KEEDHQLQAS VETFGCNWQL VSASLVGRIG 480 NQCSNRWRKT LIPERTRVGR WSLDEDKRLM VSVKILGSGS WNKIAQFVPG RTQSQCNERW 540 RNVLDPDIDL GKWRPEEDSK LLASVSEVGP CWSKIAGAMI PHRTDNMCMR RWRFLCRDEL 600 PSVKAAIQIK KSIFLSNFVD REIERPAIAP SDLMSLVHTK VDRGDENTVR SRSKKQTEEN 660 LAVPDGVNNS SSGYSAARNR RKSTTDNNEV VQKRMRGSIS VDNEAALEIM GGSISVGNEV 720 ATKRTRGSTS VGKEGTVKKR TRGPASGKER GSISVGNEGT VKKRMRGSIS VGDEGAVKNR 780 MSGSVSIDRH GGATKRKRAP SRKSAKDNLT ADCTANAVSE LDLPSVPSEE RDVDTGNVNK 840 GRRKSTPRPK QINMTEGAAD KYSTCTRLAG CMSFARRNGN NRNKKHSNSS AKPLSSAMQS 900 SGPSGEDSQA PTMTISAGSD PTYVENGSTA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-24 | 365 | 592 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-24 | 365 | 592 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002148G0200 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883083.1 | 0.0 | myb-like protein L | ||||
TrEMBL | A0A446T865 | 0.0 | A0A446T865_TRITD; Uncharacterized protein | ||||
STRING | TRIUR3_17397-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-144 | myb domain protein 4r1 |