PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002141G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 670aa    MW: 76288.2 Da    PI: 8.7835
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002141G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.41.4e-32431485155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+v gLtl+h+kSHLQk+Rl
  PH01002141G0040 431 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRIMGVRGLTLYHLKSHLQKFRL 485
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142913.0E-58146289IPR025398Domain of unknown function DUF4371
PfamPF056994.8E-7376421IPR008906HAT, C-terminal dimerisation domain
PROSITE profilePS5129411.95428488IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-31428486IPR009057Homeodomain-like
SuperFamilySSF466897.17E-16430487IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23431486IPR006447Myb domain, plants
PfamPF002496.9E-7433483IPR001005SANT/Myb domain
PfamPF143792.1E-25513559IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MERYFSKRNR SSDNDAGTSR PPLRPRQDAS NAAATPASLP NPTIPREINL DELPFDPADR  60
KRISQYSRNP KKQDEIRRIY LTRGPYRPQC GNYEQRVIGD APRRFNPEWF EEYGGWLEYR  120
QEIALRDRLG MMHLQLMLSV AMMNQRSQKN KGNFRELLDT LANQNDAIRN VVLRNAPENC  180
QWVCPDIQKE IANYFAKITL NSILEEIGGD VFSLLIDEAS DVSDKEQMAV VLRYLEKRAF  240
IVERLVGVVH VKETSAICLN SALQKLFTDI GLSIKQVRGQ CYDGASNMRE FDDRFNEVNS  300
ALLGHMASFN PKDSFAAFDL ESLKKLAEFY PDDFDSNKLK DLGHQLRIYI NNVRADKRFS  360
NLDGIADLAK LMVETKKHLT FHLVYRLLKL VLILPVATAS VERCFSTMNV VKNMLRNKMG  420
DSGLVLTTDP KPRLRWTVEL HDRFVDAVTQ LGGPDKATPK TIMRIMGVRG LTLYHLKSHL  480
QKFRLGKQHK EFNDHSVKDA SSSAMMGRSM NDVHMNEALR MQMEVQRRLH EQLEVQKHLQ  540
MRIEAQGKYM QSILEKAHQA LASGDCGTWP GGYKSLGNQA VIDIGSSISF PSLQDLHLYE  600
GRHLELQQQM ERPMDSFLAF NESCTGSVGK KSPNHYSSTG KSPMVWAGEE QAKISADQLQ  660
MASSMMMET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-18431487157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-18431487157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-18431487157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-18431487157Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002141G0040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0980261e-175FP098026.1 Phyllostachys edulis cDNA clone: bphylf053e04, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.24e-72G2-like family protein