PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002139G0430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32202.8 Da PI: 8.4439 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.5e-15 | 44 | 91 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v+++G ++W++ a+ g++Rt+k+c++rw +yl PH01002139G0430 44 KGPWTEQEDVQLVWFVRLFGERRWDLLAKVSGLKRTGKSCRLRWVNYL 91 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 97 | 142 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l++++++q+G++ W++Iar+++ gRt++++k++w++++ PH01002139G0430 97 RGRITADEERLILQLHAQWGSR-WSRIARKLP-GRTDNEIKNYWRTHM 142 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.243 | 39 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-28 | 41 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 43 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 44 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-20 | 45 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-8 | 46 | 91 | No hit | No description |
PROSITE profile | PS51294 | 25.689 | 92 | 146 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-16 | 96 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 99 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-10 | 101 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MVVKAKKIAV AAEKRGGRGR GVVEVEETMS CNDDSSGGGG GMRKGPWTEQ EDVQLVWFVR 60 LFGERRWDLL AKVSGLKRTG KSCRLRWVNY LHPSLKRGRI TADEERLILQ LHAQWGSRWS 120 RIARKLPGRT DNEIKNYWRT HMRKKAQEEK KKRAAASASP SSSSSSTTTS CSASLNNGTS 180 STSSAVTELV QESSSGDEAE EATTAASQQQ QQQQQPRDQQ ENYYIMDQLW NEIAAAEAAT 240 SYAEGWGAGH VVAAEPASSM PSPVWEFSAD FSLWRIDDEE YYKKMLDAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 44 | 146 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 8e-27 | 44 | 146 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-27 | 44 | 146 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 44 | 146 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 44 | 146 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002139G0430 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951904 | 1e-121 | JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156198.1 | 1e-97 | myb-related protein MYBAS2-like | ||||
Swissprot | Q4JL76 | 3e-68 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A0E0KXR0 | 1e-103 | A0A0E0KXR0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G00970.1 | 1e-104 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-63 | myb domain protein 59 |
Publications ? help Back to Top | |||
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