PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002082G0250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 30453.9 Da PI: 6.8782 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd l+++++ +G g+W++ ++ g+ R++k+c++rw++yl PH01002082G0250 14 RGRWTAEEDGVLARYIADHGEGSWRSLPKNAGLSRCGKSCRLRWLNYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++ +++++ lG++ W++Iar ++ gRt++++k++w+++l PH01002082G0250 67 RGNISKEEEDTIINLHSSLGNR-WSLIARQLP-GRTDNEIKNYWNTHL 112 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.555 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.11E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.21E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.009 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.20E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGRAPCCDKV GLKRGRWTAE EDGVLARYIA DHGEGSWRSL PKNAGLSRCG KSCRLRWLNY 60 LRTDIKRGNI SKEEEDTIIN LHSSLGNRWS LIARQLPGRT DNEIKNYWNT HLSRQIHTFW 120 GAPADGHAAA AVTIDIRVLP GGRTSRRPVV DSKKPAGAGT EAVTVGHSNS TGAETAAPSP 180 MASQSDELRL HSVVVERKKQ AGNMSAAPSS EGSSGTMGLS PTGIGQWEAG SEIRDGGGPV 240 VGRAEEDDLS GVDWEGLAAQ LWGDVSLGSE LESLARWLMS DSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002082G0250 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629329.1 | 3e-87 | myb-related protein P | ||||
Swissprot | P27898 | 1e-72 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A0E0KCP6 | 4e-90 | A0A0E0KCP6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G13890.1 | 6e-91 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-67 | myb domain protein 12 |