PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002026G0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 651aa MW: 70788.7 Da PI: 4.4443 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.9 | 3.4e-52 | 19 | 147 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+eP dLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+ev PH01002026G0020 19 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPCDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREV 111 579***************************.99***************4357888999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + ++vg+kktLvf+ grapkge+t+Wvmheyrle PH01002026G0020 112 RH-GARVVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 147 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-60 | 10 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.91 | 19 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MTHASSSSSS APAAETTSLA PGFRFHPTDE ELVSYYLKRK VLGRPLKVDA IAEVDLYKLE 60 PCDLPARSRL RSRDSQWYFF SRLDRKHANR ARTNRATAGG YWKTTGKDRE VRHGARVVGM 120 KKTLVFHAGR APKGERTNWV MHEYRLEGDD AAGIPQDSFV VCRIFQKAGP GPQNGAQYGA 180 PFVEEEWEEE DVVGLLPVER NDIADREVPG AMERGYLQMN DLTQDSGVQN GNGSVTLPVS 240 DISNNSNHSE DVDGNSGDIL SDPNLGSNFL QYVEPGEQNS LMLNENMLSN ANAGEFFIGS 300 SPNDGFLELK DFADAANLEY PLGNDSTIWP SDGWPWKTPD SLEAVNGANY VFSPLTDEQT 360 FQPEELEQLL QSLQEDSPLG SAITHPPHSS ITNSVKPEDD SLMFYDAPFD SRMFDDGFRQ 420 QNGFLGSPAT NLSGIDMVDD GMAYYDAIDD NLFNDILGSV QQSAGSSSHA FNGPVLTQEV 480 NNTTHTYSPT QKVLEPNFVV GAPSSARLPE AGSQLNCVVL PDGQAKSTVG KRFVKILDSI 540 SAPPAFAAEF PANLGKSLAP ISGAHPNAIC VSAEVISIGS LTVASRPDKW SLEKDQGMEL 600 LFSTGFEPDT RIHCGCNTIT AVLRGGFCLF FFSAIMLLVS CEVGMCIYGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-46 | 13 | 167 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002026G0020 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820240.1 | 0.0 | NAC domain-containing protein 53-like | ||||
TrEMBL | A0A2S3I4R1 | 0.0 | A0A2S3I4R1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DAU2 | 0.0 | A0A2T7DAU2_9POAL; Uncharacterized protein | ||||
STRING | Sb07g023900.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7107 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 7e-77 | NAC domain containing protein 53 |