PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002026G0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 651aa    MW: 70788.7 Da    PI: 4.4443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002026G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52191471129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+eP dLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd+ev
  PH01002026G0020  19 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPCDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREV 111
                      579***************************.99***************4357888999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + + ++vg+kktLvf+ grapkge+t+Wvmheyrle
  PH01002026G0020 112 RH-GARVVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 147
                      **.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6010167IPR003441NAC domain
PROSITE profilePS5100557.9119167IPR003441NAC domain
PfamPF023651.4E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MTHASSSSSS APAAETTSLA PGFRFHPTDE ELVSYYLKRK VLGRPLKVDA IAEVDLYKLE  60
PCDLPARSRL RSRDSQWYFF SRLDRKHANR ARTNRATAGG YWKTTGKDRE VRHGARVVGM  120
KKTLVFHAGR APKGERTNWV MHEYRLEGDD AAGIPQDSFV VCRIFQKAGP GPQNGAQYGA  180
PFVEEEWEEE DVVGLLPVER NDIADREVPG AMERGYLQMN DLTQDSGVQN GNGSVTLPVS  240
DISNNSNHSE DVDGNSGDIL SDPNLGSNFL QYVEPGEQNS LMLNENMLSN ANAGEFFIGS  300
SPNDGFLELK DFADAANLEY PLGNDSTIWP SDGWPWKTPD SLEAVNGANY VFSPLTDEQT  360
FQPEELEQLL QSLQEDSPLG SAITHPPHSS ITNSVKPEDD SLMFYDAPFD SRMFDDGFRQ  420
QNGFLGSPAT NLSGIDMVDD GMAYYDAIDD NLFNDILGSV QQSAGSSSHA FNGPVLTQEV  480
NNTTHTYSPT QKVLEPNFVV GAPSSARLPE AGSQLNCVVL PDGQAKSTVG KRFVKILDSI  540
SAPPAFAAEF PANLGKSLAP ISGAHPNAIC VSAEVISIGS LTVASRPDKW SLEKDQGMEL  600
LFSTGFEPDT RIHCGCNTIT AVLRGGFCLF FFSAIMLLVS CEVGMCIYGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-46131679168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002026G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGSb07g023900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.17e-77NAC domain containing protein 53