PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002022G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 358aa    MW: 39524.6 Da    PI: 7.134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002022G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30165221259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg ++prsYY+Ct+ +C v+k+ve+sa d+++++i+Y+g+H he
  PH01002022G0200 165 DDGYNWRKYGQKAVKGGKYPRSYYKCTHGNCLVRKNVEHSA-DGRIIQIIYRGQHSHE 221
                      8****************************************.***************8 PP
2WRKY34.54.1e-11333354122
                      ---SS-EEEEEEE--TT-SS-E CS
             WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                      ldDgy+WrKYGqK+vk +++pr
  PH01002022G0200 333 LDDGYRWRKYGQKVVKANPHPR 354
                      59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-27161223IPR003657WRKY domain
SuperFamilySSF1182901.18E-24163223IPR003657WRKY domain
SMARTSM007741.4E-31164222IPR003657WRKY domain
PROSITE profilePS5081123.778165223IPR003657WRKY domain
PfamPF031063.4E-23165220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-12320355IPR003657WRKY domain
SuperFamilySSF1182902.09E-9326356IPR003657WRKY domain
PROSITE profilePS5081115.216328357IPR003657WRKY domain
PfamPF031064.5E-7334355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MANGAGALAN SSAAKRSKTT QVPTALWRRR EIQKNWDVTD WAEHVARKGK APTSESGDRP  60
SAPRHLSVVR IKDDNFEMFH EQDLAQLTAQ VAHSKYSILN QADNSSSFSL ATSALTSQHV  120
SSSVIVASMQ EMPILPSHTD NINTEITGVL QGLQRSSITL DRPADDGYNW RKYGQKAVKG  180
GKYPRSYYKC THGNCLVRKN VEHSADGRII QIIYRGQHSH ERPSKRRFRD CGGLPNELDD  240
FNDNEDASTR SQSDFLDCYG KHITSNGTIA GCLMARREEG DEQLSGSCDS QEEGDDEVRM  300
DDGAAGDSNA NERNAPAPGQ KIIVSTTSDV DLLDDGYRWR KYGQKVVKAN PHPRLFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-171652241878Probable WRKY transcription factor 4
2lex_A2e-171652241878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002022G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.21e-132probable WRKY transcription factor 3
RefseqXP_015694711.11e-134PREDICTED: probable WRKY transcription factor 3, partial
TrEMBLA0A0E0LKK41e-135A0A0E0LKK4_ORYPU; Uncharacterized protein
STRINGOPUNC07G12950.11e-136(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.27e-52WRKY DNA-binding protein 4