PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002011G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 375aa    MW: 42201.9 Da    PI: 9.3623
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002011G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.5e-1566125155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+++k++gr++ +++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  PH01002011G0250  66 SRFRGVSRHKWTGRFEGHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 125
                      789******************888855666447*************************98 PP
2AP241.53.4e-13157202755
              AP2   7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      r++  +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  PH01002011G0250 157 RRHQHNGRWEARIGRlF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 202
                      89999*******99988...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-1666134IPR016177DNA-binding domain
PfamPF008471.2E-1166125IPR001471AP2/ERF domain
PROSITE profilePS5103219.34867133IPR001471AP2/ERF domain
SMARTSM003801.2E-2267139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1467133IPR001471AP2/ERF domain
PRINTSPR003674.1E-56879IPR001471AP2/ERF domain
PROSITE profilePS5103216.753151210IPR001471AP2/ERF domain
PfamPF008471.0E-8157202IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15157211IPR016177DNA-binding domain
CDDcd000181.78E-21158210No hitNo description
SMARTSM003807.5E-21158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-15158210IPR001471AP2/ERF domain
PRINTSPR003674.1E-5192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MIVKTEINSN PRLPANMMVG ASEGSQASKG IKRRRREATL LTPITSSTNG SNFENSTTSM  60
TIKRSSRFRG VSRHKWTGRF EGHLWDKNSW NPTQRKKGKQ VYLGAYDEEE AAARAYDLAA  120
LKYWGPTTYT NFPVIDYKNE LKIMENHTKE EYLASLRRHQ HNGRWEARIG RLFGNKYLYL  180
GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LRSYITWLKP SVSHTANTEA LAMATPTENL  240
FPRETQIFSQ NNPFILHHNA RQGNEEVTIS PNCSRTRASS TALSLLLKSS VFKQLVEENS  300
DANNKTGGDI SEPVSQTEAN EYHNFFHGGA PDMLGLFSPT GSYNNSIGYQ ENNPYSDNSE  360
RMTWNGPASV PVLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002011G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961382.11e-147ethylene-responsive transcription factor WRI1
TrEMBLA0A0Q3GDV90.0A0A0Q3GDV9_BRADI; Uncharacterized protein
STRINGBRADI2G48130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-63AP2 family protein