PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01002000G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 25734.1 Da PI: 8.7051 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl PH01002000G0040 14 KGAWTKEEDQRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T E el+++ + +lG++ W++Ia ++ gRt++++k++w+++ PH01002000G0040 67 RGNFTDHENELIIRHHSLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.056 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.21E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.37E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDHENELIIR HHSLLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPQTHRPLL SGTTDAASNV PAKAAAVFAV TKPPAPVESS DDGSSGATST GEPRCPDLNL 180 DLSVGPPPAD TPTSQPVCLC YHLGFRGGEA CSCQAGSASP QGFRYFRPLE EGQYI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01002000G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK066834 | 1e-162 | AK066834.1 Oryza sativa Japonica Group cDNA clone:J013083O13, full insert sequence. | |||
GenBank | AK104053 | 1e-162 | AK104053.1 Oryza sativa Japonica Group cDNA clone:001-023-G03, full insert sequence. | |||
GenBank | D88617 | 1e-162 | D88617.1 Oryza sativa mRNA for OSMYB1, complete cds. | |||
GenBank | EU837246 | 1e-162 | EU837246.1 Oryza sativa Japonica Group clone KCS051A09 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638107.1 | 1e-136 | transcription factor MYB8 | ||||
Swissprot | P81393 | 2e-94 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A287G8K9 | 1e-139 | A0A287G8K9_HORVV; Uncharacterized protein | ||||
TrEMBL | Q06944 | 1e-139 | Q06944_HORVU; MybHv5 | ||||
STRING | MLOC_71041.1 | 1e-139 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-85 | myb domain protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|