PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001996G0370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 31222.2 Da PI: 7.9513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v+++G +W + +++ g++R++k+c++rw++yl PH01001996G0370 14 RGPWSPEEDEQLRSYVQRHGISgNWIALPQKAGLNRCGKSCRLRWLNYL 62 89******************889************************97 PP | |||||||
2 | Myb_DNA-binding | 37.5 | 5.4e-12 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T++Ed+ + + + G++ W+ Ia++++ gRt++++k++w++ PH01001996G0370 71 YTEQEDQMICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 69*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.409 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-9 | 16 | 62 | No hit | No description |
SMART | SM00717 | 3.2E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.166 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.6E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRAPCCDKA RVKRGPWSPE EDEQLRSYVQ RHGISGNWIA LPQKAGLNRC GKSCRLRWLN 60 YLRPDIRHGG YTEQEDQMIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKATVA 120 VHPGGASGAS SAPATPPGTR SQCTSLQPAL SPAASASSSV TSSSGDICFA AMYPPHPQPQ 180 GLIHFDAPPS RKPQTELAPV PPATVALDVS GGWAPAPAAS VDGVTLDDVF LAELGGAGEQ 240 LLFPYGDQFG GFGGLQDKAT LELSACYFPN MAEMWAAFDH AHAKPQGLCG TLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001996G0370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108452 | 1e-153 | AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654754.1 | 1e-129 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | J3M9J1 | 1e-128 | J3M9J1_ORYBR; Uncharacterized protein | ||||
STRING | OB05G32650.1 | 1e-128 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-67 | myb domain protein 84 |