PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001990G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 520aa    MW: 57365.8 Da    PI: 4.3202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001990G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07323371247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      +rWT eE++l+ +++   +       W+  ++ ++ g+t k+++s+++++
  PH01001990G0120 323 QRWTDEEEKLFQRVISSNPISlgknFWDYLPHALP-GKTSKELVSYYFNV 371
                      79*************9754444444**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.11324372IPR017877Myb-like domain
CDDcd001673.82E-6324372No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MVFTHNKNAD QFDPLSYGNL RVLETNSQPP PFTEMNSGDA ASNSNVTGLG KENMFSNSEE  60
CKFGNAGLKD SSPISLENFS FSSLPASSCQ SSTLDHGKRP LSDVKPCQVA CKRPKQTDEA  120
LADGFVETEE LDRIRANNCT TICSTNSGIP YPNCKQPIGE ESLYLPDWVT SFPGYFEGLV  180
AEYNQVDDIE SPVHEYLPRK AMATGPGHQA DIPEWRPRVS MNVPGTSGSC ADLAHGSVSI  240
SAARDEDSET DKWIRHCIIP MPSFSCPVAW VGDYKTDCEC SDEGSIRCAR QHVMEARENL  300
KKSLGHDKFR ELGLCEMGED IAQRWTDEEE KLFQRVISSN PISLGKNFWD YLPHALPGKT  360
SKELVSYYFN VFMLQKRAHQ NRSDLLHVDS DDDESPGEPA VTEQEDEDSA MESPTHGRYI  420
DNTVSTEDVH DESEEQLHSS FPEKVIDNVP ESRRGPNQTP LESNPDNPVE DVDIQVESCT  480
SFEGQHNGGH GPNGVQCAEF HVMPSNDGPD NNGDQGACV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001990G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650209.20.0PREDICTED: uncharacterized protein LOC102701621
TrEMBLJ3LPY10.0J3LPY1_ORYBR; Uncharacterized protein
STRINGOB03G31070.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1443166