PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001971G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family RAV
Protein Properties Length: 380aa    MW: 40161.3 Da    PI: 9.4536
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001971G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384e-1269117155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  PH01001971G0060  69 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 117
                      89****9888.8*********......44**********99*************98 PP
2B3962.5e-30200291185
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk++ae++        g   +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++
  PH01001971G0060 200 FDKTVTPSDVGKLNRLVIPKQHAEKNfplqlpsAGCASKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVVGFYRS 291
                      89***************************888855556999************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1569123IPR016177DNA-binding domain
PfamPF008475.8E-869117IPR001471AP2/ERF domain
CDDcd000182.48E-2169123No hitNo description
SMARTSM003802.4E-2370131IPR001471AP2/ERF domain
PROSITE profilePS5103218.83470125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-1870123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-38195309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-30198292IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-29198303No hitNo description
PROSITE profilePS5086313.394200309IPR003340B3 DNA binding domain
SMARTSM010194.0E-22200308IPR003340B3 DNA binding domain
PfamPF023624.3E-27200291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDSTSCLVDD TNSGSASTDR LKAMAAAAAA PLERMGSGAS AVVDAAEPGA EADSGGAGAG  60
RAGGKLPSSK YKGVVPQPNG RWGAQIYERH QRVWLGTFAG EADAARAYDV AAQRFRGRDA  120
VTNSRPLAEA DPDAAAELRF LASRSKAEVV DMLRKHTYLD ELAQSRRAFA ASVPTTSPPN  180
AHGHSSSPPS PAAAAREHLF DKTVTPSDVG KLNRLVIPKQ HAEKNFPLQL PSAGCASKGV  240
LLNFEDAAGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKGL RAGDVVGFYR SAAGAGEDSK  300
LFIDCKLRPG SAALTDPADQ PAPVAKAVRL FGVDLLTAPA SAAMPKEEMA GCKRARDLAT  360
PPQAAFKKPC IELTLYASVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5219731111120DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001971G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982980.0FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622542.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A0E0JMR40.0A0A0E0JMR4_ORYPU; Uncharacterized protein
STRINGOPUNC01G27280.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-101related to ABI3/VP1 2