PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001931G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 214aa MW: 23699.1 Da PI: 8.1013 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 51.4 | 2.5e-16 | 20 | 51 | 24 | 55 |
G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +++AtPkti+++m+vkgLtl h+kSHLQkYRl PH01001931G0070 20 IHEATPKTIMRTMGVKGLTLFHLKSHLQKYRL 51 579****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-6 | 16 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 17 | 52 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-10 | 21 | 52 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.4E-22 | 92 | 137 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MQFDDVTVAT KRSLQQQIPI HEATPKTIMR TMGVKGLTLF HLKSHLQKYR LGKQSGKEMT 60 EQSKDASYLM EAQSGTNLSP RVPTPDVKES QEVKEALRAQ MEVQRRLHEQ VEVQKHVQIR 120 MEAYQKYIDT LLEKACKIVS EQLSGFSISD HDLPDLASAG VICDPADPLS PSVFHQLSVS 180 SISLQSPGGK ASPSALDGQL FFQKPPELKP KSC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001931G0070 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039053 | 1e-139 | BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds. | |||
GenBank | EU967839 | 1e-139 | EU967839.1 Zea mays clone 306497 myb family transcription factor-related protein mRNA, complete cds. | |||
GenBank | JX469981 | 1e-139 | JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659337.2 | 1e-109 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q94A57 | 1e-46 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | J3MSE3 | 1e-111 | J3MSE3_ORYBR; Uncharacterized protein | ||||
STRING | OB08G20220.1 | 1e-112 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 5e-49 | G2-like family protein |
Publications ? help Back to Top | |||
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