PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001930G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 298aa    MW: 32840.7 Da    PI: 8.3463
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001930G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.66.6e-0967101539
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                      +r +r   NR +A+rsR RK+++i eLe+ v +L+
  PH01001930G0220  67 RRVKRILANRQSAQRSRVRKLQYISELERSVTSLQ 101
                      67899999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-763127IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.26E-967121No hitNo description
PfamPF001702.6E-767102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-967102No hitNo description
CDDcd147031.52E-1768118No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSMFSDDLPP PPPQQQQAAA SESSPSDHNS INDEKQDKGE TEEAQSQCNG DGAAPGQPAS  60
PSMADPRRVK RILANRQSAQ RSRVRKLQYI SELERSVTSL QVRAELRIPR VNYAFRERFE  120
LNFANNTVNL TAKLCASEQA EVSALSPRVA FLDHQRSLLT LGNSHLKQRI AALAQDKIFK  180
DGDRHCHLNY YYNSHQSLSE FNSRCMHAAA AMMLSQNPLL LTLPEFFLLS SSGGTEEGDR  240
EAAANLPPTK PQERGIPTAR RAPGPQRQGH DRQRGDPRAV HALVIEIRAA VVEVSAS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001930G0220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009449e-71AK100944.1 Oryza sativa Japonica Group cDNA clone:J023138F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191576.13e-64basic leucine zipper 2-like
SwissprotQ5QNI51e-71BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A3B6ECI27e-80A0A3B6ECI2_WHEAT; Uncharacterized protein
STRINGOB01G17130.12e-65(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.27e-36bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]