PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001914G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 786aa    MW: 85343.4 Da    PI: 5.2076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001914G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-2093149157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  PH01001914G0110  93 KKRYHRHTQNQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 149
                      688999************************************************995 PP
2START191.44.3e-602865201206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                      ela +a++elv++a+++ep+W         e +n++e+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d++ q+ + +     +a+
  PH01001914G0110 286 ELAVAAMEELVRMAQLDEPLWDPPGidgptETLNEEEYARMFPRGLGpkqygLKSEASRDSAVVIMTHANLVEILMDVN-QYATVFSsivsRAA 378
                      57899****************87668999*************998889*******************************.88888888888*** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE...... CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh...... 161
                      tlev+s+g      galq+m+ ++q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+      
  PH01001914G0110 379 TLEVLSTGvagnynGALQVMSVDFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYskssat 468
                      **************************************************************98....7************************* PP

                      .......EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 162 .......skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +vtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  PH01001914G0110 469 deislsmHQVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 520
                      ***99888******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-2273148IPR009057Homeodomain-like
SuperFamilySSF466891.67E-1980150IPR009057Homeodomain-like
PROSITE profilePS5007117.0790150IPR001356Homeobox domain
SMARTSM003896.1E-2091154IPR001356Homeobox domain
CDDcd000862.78E-1992151No hitNo description
PfamPF000461.6E-1793148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084839.085277523IPR002913START domain
SuperFamilySSF559618.79E-32278522No hitNo description
CDDcd088753.99E-120281519No hitNo description
SMARTSM002348.4E-57286520IPR002913START domain
PfamPF018522.7E-49287520IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-5347515IPR023393START-like domain
SuperFamilySSF559611.76E-23541775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MPSMIGRNSA AYGSSSALSL GQPNLLENQQ LQQALQQQHL LDQIPATTAE SGDNMIRRRE  60
SDPLGDEFES KSGSENVDGV SVDDQDPNQR PRKKRYHRHT QNQIQEMEAF FKECPHPDDK  120
QRKELSRELG LEPLQVKFWF QNKRTQMKNQ HERHENSQLR GENEKLRAEN MRYKEALSSA  180
SCPNCGGPAA LGEMSFDEHH LRIENARLRE EIDRISAIAA KYVGKPMVSF PVLSNPMAAS  240
RAPLDLAVGP YGAVQLGLAG ADMFGAGAGE LLRGVQTEVD KPMIVELAVA AMEELVRMAQ  300
LDEPLWDPPG IDGPTETLNE EEYARMFPRG LGPKQYGLKS EASRDSAVVI MTHANLVEIL  360
MDVNQYATVF SSIVSRAATL EVLSTGVAGN YNGALQVMSV DFQVPSPLVP TRESYFVRYC  420
KQNSDGTWAV VDVSLDSLRP SPVLKCRRRP SGCLIQEMPN GYSKSSATDE ISLSMHQVTW  480
VEHVEVDDRS VHNIYKLLVN SGLAFGARRW VGTLDRQCER LASVMASNIP TSDIGVITST  540
EGRKSMLKLA ERMVMSFCGG VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN  600
AATSFWLPVP PKRVFDFLRD ESSRSEWDIL SNGGVVQEMA HIANGRDHGN CVSLLRVNST  660
NSNQSNMLIL QESCTDASGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAG  720
NMQGGGAVAD GVGSGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIACT VERIKAAVSG  780
ESNPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001914G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016450.0AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636338.10.0homeobox-leucine zipper protein ROC2 isoform X1
RefseqXP_015636339.10.0homeobox-leucine zipper protein ROC2 isoform X1
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A1E5WHW10.0A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
STRINGORGLA04G0231200.10.0(Oryza glaberrima)
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]