PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001907G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 339aa    MW: 36232.1 Da    PI: 9.4775
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001907G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16181214134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C  C+ttkTplWR+gp g+k+LCnaCG+++rk +
  PH01001907G0160 181 CLDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 214
                      889****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-13172214No hitNo description
SMARTSM004011.1E-17175226IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.004179211IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-14179214IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.77E-13180212No hitNo description
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
PfamPF003202.4E-14181214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSTIYMSQLC SLPLMEGDQD QGHSPAFHLA KDPPILFPFN FMINSPVEHQ GQSYGDQHLW  60
HQVLGESNQQ FNDHMMTGGS DAFPTPALFR PTIQGIGSDM IQRSSYDPYD IENKPADGSA  120
SKWTSATPPA KMRIVRKATS NDLEGGAARK PRRRAQAYQA DESQQQQQQQ QQQAMGVIRV  180
CLDCNTTKTP LWRSGPCGPK SLCNACGIRQ RKARRAMAAV TAAAANGGAA GVGTPVSNAQ  240
AKPKKQEKRA DVDRSLPFKK RCKMVDHAAA AAAPATAAKA AAGVAAPKKD HDHVGENVAA  300
ASLSKAGSPP AFLHGFPRDE ITDAAMLLMT LSCGLVRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001907G0160
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922380.0FP092238.1 Phyllostachys edulis cDNA clone: bphylf025c09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571121.11e-156putative GATA transcription factor 22
SwissprotQ6YW481e-138CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLI1HYT11e-155I1HYT1_BRADI; Uncharacterized protein
STRINGBRADI3G08240.21e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-18GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]