PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001892G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 781aa    MW: 85550 Da    PI: 6.2843
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001892G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18563357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  PH01001892G0010  5 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDClvlaNVDPKQIKVWFQNRRCREKQ 63
                     6789*****************************************************97 PP
2START171.65e-541513582204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++++++ka+ +   Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+++l
  PH01001892G0010 151 IAEETLTVFLSKATGTTVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGsnGTIEL 243
                      7899******************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+
  PH01001892G0010 244 LYMQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHVVDHMDLEPWSVPEVVRP 337
                      *********************************************999999******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+ +a+l++++
  PH01001892G0010 338 LYESSAMVAQKMSMAALRYLR 358
                      *****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.402164IPR001356Homeobox domain
SMARTSM003893.7E-14268IPR001356Homeobox domain
CDDcd000861.77E-15565No hitNo description
PfamPF000463.8E-16563IPR001356Homeobox domain
SuperFamilySSF466891.15E-15666IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-17763IPR009057Homeodomain-like
CDDcd146863.74E-65796No hitNo description
PROSITE profilePS5084824.26141360IPR002913START domain
CDDcd088754.26E-72145359No hitNo description
Gene3DG3DSA:3.30.530.201.4E-22149355IPR023393START-like domain
SMARTSM002341.1E-43150360IPR002913START domain
SuperFamilySSF559611.92E-36150361No hitNo description
PfamPF018527.8E-52151358IPR002913START domain
PfamPF086704.5E-28685781IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRDCL VLANVDPKQI KVWFQNRRCR  60
EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYYRQQTH STGLATTDTS  120
CESVVTSGQQ NVVAPPQPQP RDASPAGLMS IAEETLTVFL SKATGTTVEW VQMPGMKPGP  180
DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRPLW LRDCRSMEVV NVLPAGSNGT  240
IELLYMQLYA PTTLAPARDF WLLRYTSILD DGSLVVCERS LSSKQGGPSM PLVQPFIRGE  300
MLPSGFLIRP SDGGGSVIHV VDHMDLEPWS VPEVVRPLYE SSAMVAQKMS MAALRYLRQV  360
AHEDTHSIIT GWGRQPSALR ALSQKLTRGF NEALNGLADD GWSVIESDGV DDVCISVNSS  420
PSKVIGCNAT FSDGLPIVST GVLCAKVSML LQDVSPPSLL RFLREHRSQW ADSNLDAFFA  480
SAMKPNFCNL PMSRLGGFSG QVILPLAHTF DPEEFLEVIK LGNASNYQDT LMHRDLFLLQ  540
MYNGVNENTV GTCSELIFAP IDASFSDDSP LLPSGFRIIP IDSPVDTSSP NCTLDLASTL  600
EVGTPRSRIG GGSGNGTCAN SKAVMTIAFQ FAFESHLQDN VAAMARQYMR SIISSVQRIA  660
LALSSSHLVS RGGIPLAPVS PEAATLSRWI CQSYRFHFGA ELIKSADTNG SQSVLKALWH  720
HSSAILCCLP KAMPVFTFAN QSGLDMLETT LVALQDITLE KVFDDQGRKN LCTELPSIME  780
Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001892G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816436.10.0homeobox-leucine zipper protein HOX29-like
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A2S3HYQ00.0A0A2S3HYQ0_9POAL; Uncharacterized protein
STRINGSb03g002660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein