PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001885G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 332aa    MW: 36083.5 Da    PI: 6.7742
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001885G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17159212356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+ ++ keq   Le+ F+++++++ +++ +LA++l+L  rqV vWFqNrRa+ k
  PH01001885G0240 159 KKLRLCKEQSAFLEDSFKEQSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 212
                      66677799********************************************98 PP
2HD-ZIP_I/II1222.9e-39158246189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl keq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++ l++en+rL++ev+eLr+
  PH01001885G0240 158 RKKLRLCKEQSAFLEDSFKEQSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEMLTQENRRLQREVAELRA 246
                      69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-16151215IPR009057Homeodomain-like
PROSITE profilePS5007116.439154214IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-16155217IPR009057Homeodomain-like
SMARTSM003892.4E-13158218IPR001356Homeobox domain
CDDcd000866.42E-15158215No hitNo description
PfamPF000467.1E-15159212IPR001356Homeobox domain
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
CDDcd146860.00437207246No hitNo description
PfamPF021839.2E-11214246IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.0E-22214257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELELSLGDS PVPAKATVTP APAPTRTGGR EGHELVLELG VRTAKRAEQE NQKSGTRPEE  60
AVEGEDDEAE GKDEEHPRGK PPIELSLSCP LLPASAQAGS VNSEVCTRGF DVNTVPADGG  120
AATARSLSPS SMQVEVSVRQ AANQEAAEDE ENGGGGVRKK LRLCKEQSAF LEDSFKEQST  180
LTPKQKSDLA NRLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCEML TQENRRLQRE  240
VAELRAFRTT YPLYNYHHLS GVSTVLRVCP SCDNTVATAY SPPIITTPAA ITAVPSPVGA  300
PPSSMSTLFA RPHFGPFTIH PVLRRQPSAT S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001885G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755648.11e-149homeobox-leucine zipper protein HOX7
RefseqXP_024318098.11e-149homeobox-leucine zipper protein HOX7
SwissprotA2X6741e-129HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A0Q3I2751e-148A0A0Q3I275_BRADI; Uncharacterized protein
STRINGBRADI3G46320.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-53homeobox from Arabidopsis thaliana